Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 189 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  144 bits (363), Expect = 9e-40
 Identities = 82/179 (45%), Positives = 111/179 (62%), Gaps = 4/179 (2%)

Query: 1   MQTTEGHLRALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAV 60
           +Q  E  LRAL++ GL GDA A+ A L  L   LRGF RRR+     ++ED++Q+ L+AV
Sbjct: 10  LQARENELRALLLRGLDGDARAYRAFLDQLGGHLRGFLRRRL-SQSSELEDVLQEVLLAV 68

Query: 61  HTRRATYDPERAFTAWLYAVARYKMIDHFRRVGR-LRPID--DLADSLVADEFEASSIAR 117
           H  R TY  E+  T W+ A+ RYK+ DH+R  GR    +D  D AD L+A +  A + A 
Sbjct: 69  HNARQTYRAEQPLTVWVQAICRYKLADHYRARGRQAAQMDWLDEADELLAVQDNAQAEAC 128

Query: 118 LDINDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHG 176
            D+  LLEQLPP+Q   I  ++LEG SV E A   G+  S +KV +HRGLKAL A++ G
Sbjct: 129 RDLGKLLEQLPPRQRLPIVHVKLEGRSVEETARLTGLSSSAIKVGIHRGLKALAAKIRG 187