Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 45.1 bits (105), Expect = 8e-10
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 19  DAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTA-WL 77
           D  A A +     P L+ F  + V G++    ++VQ+T+  V  + + +D +++  A W+
Sbjct: 25  DTQAFALVFSYYSPKLKQFVMKHV-GSEQVALELVQETMSTVWQKASLFDGQKSSLATWI 83

Query: 78  YAVARYKMIDHFRR-VGR--------LRPIDDLADSLVADEFEASSIARLDINDLLEQLP 128
           Y +AR    D  RR  GR        + P D     LV        + +  +   L++LP
Sbjct: 84  YTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLP 143

Query: 129 PKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKAL 170
             Q ++I+A+ LE +   + A    I    VK  +   ++ L
Sbjct: 144 EAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185