Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 173 a.a., RNA polymerase sigma-E factor (sigma-24) protein from Sinorhizobium meliloti 1021

 Score = 45.8 bits (107), Expect = 4e-10
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 16  LGGDAAAHAALLRL----LVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPER 71
           +GG A+  + LL      L+P LR F  R    A  + +D+VQ+TL+        ++P  
Sbjct: 4   IGGHASRQSPLLEEQVVDLIPALRAF-ARTFTSASFEADDLVQETLLRALRSIEQFEPGT 62

Query: 72  AFTAWLYAVARYKMIDHFRRVGRLRPIDDLADSLVAD------EFEASSIARLDINDLLE 125
           +  +WL+ + R    + FR   ++R  +    +  A+        +  S+   ++   L 
Sbjct: 63  SLKSWLFTIMR----NAFRTQYKIRTRESPGSTNCAELPIPTAPSQEWSVLNGELRSALG 118

Query: 126 QLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHG 176
            L P+   ++  +   G+S  EAA         +K  + R    L A++HG
Sbjct: 119 ALSPEHREVLVLVAGFGMSYKEAADICDCAIGTIKSRLSRARDELTAQMHG 169