Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 178 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score =  105 bits (263), Expect = 3e-28
 Identities = 63/171 (36%), Positives = 100/171 (58%), Gaps = 4/171 (2%)

Query: 5   EGHLRALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRR 64
           +G L  L+   LGG+  A++  L+    L+R + RRRV     D ED+VQ+TL+AVH +R
Sbjct: 6   DGDLAGLLRTALGGNEKAYSEFLQSAAALVRIWARRRVASVGLDPEDIVQETLLAVHLKR 65

Query: 65  ATYDPERAFTAWLYAVARYKMIDHFRRVGRLR--PIDDLADSLVADEFEASSIARLDIND 122
            T+        WL+A+AR+K++D  RR GR     + ++  +L  +  EA +    +I  
Sbjct: 66  HTWRTGGPVKPWLFAIARHKLVDALRRHGRHSRVQLSEIEGNLATE--EAETARDWEIGR 123

Query: 123 LLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMAR 173
            LE L P Q  ++ AI +EG ++AEAA +  + E+ V+V++HRGL A+  R
Sbjct: 124 ALEVLTPGQRSVVTAISVEGRTIAEAARSLDMNETAVRVALHRGLAAIARR 174