Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 219 a.a., RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 60.1 bits (144), Expect = 3e-14
 Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 10  ALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDP 69
           AL+I    GD  A A L   LVP   G    RV G   + ED+ Q+ ++ +  +   ++P
Sbjct: 38  ALLIRFAAGDPEAAAVLTARLVPRALGV-ALRVLGNRAEAEDITQEAMVRLWRQAEHWEP 96

Query: 70  ERA-FTAWLYAVARYKMIDHFRRVG----RLRPIDDLADSLVADEFEASSIARLD-INDL 123
            RA  + WLY V     IDH RR+      L  I D  D   +   +    AR D + D 
Sbjct: 97  GRARLSTWLYRVVMNLCIDHKRRLRGGHVDLDAIPDPPDPAKSAAEQMQDGARQDALQDA 156

Query: 124 LEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHG 176
           L QLP +Q + +    +E L+  E A    I    V+    RG +AL A + G
Sbjct: 157 LMQLPERQRQAVVLRHIEDLANPEIAGIMDISVEAVESLTARGKRALAAILAG 209