Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 216 a.a., 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' from Phaeobacter inhibens DSM 17395

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 22  AHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERA-FTAWLYAV 80
           A   L     P L+G   R         E++VQD ++ V  + A +DPERA  +AW+Y +
Sbjct: 55  AFGRLFDYFAPRLKGMICRSGM-PPSQAEEVVQDVMLTVWRKSAMFDPERAQVSAWIYQI 113

Query: 81  ARYKMIDHFRRVGRLRPIDDLADSLVADEFEASSIARLD-----INDLLEQLPPKQARMI 135
           AR + ID  R+    RPI +        + +A+ I  LD     +   L +L P Q  M+
Sbjct: 114 ARNRQIDVIRK--ERRPIPEELKLPEDTQEDAAQILALDQETSKLRAALARLKPAQREMV 171

Query: 136 RAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKAL 170
               L  L+ A+     G+    +K  +  GL+ L
Sbjct: 172 EKAYLGELTHADIREQTGLPLGTIKSRIRLGLERL 206