Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 197 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella loihica PV-4

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 36  GFYR--RRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAVARYKMIDHFRRVG 93
           G YR  +R  G     ED+ Q+T   V    A Y+    FT WLY +A   +IDH R   
Sbjct: 37  GLYRYFKRQLGDSALAEDLYQETWSRVIKAAAGYEQRAKFTTWLYRIAHNLLIDHVR--- 93

Query: 94  RLRPIDDLAD--------SLVADEFEASSIARLD-------INDLLEQLPPKQARMIRAI 138
            L+P+D L+D          V    E+    RL+       +   +  LP  Q       
Sbjct: 94  ALKPVDSLSDPAGEEQSLEAVIPSDESGPDGRLEDEQKALLLKHCISLLPHVQKEAFLLN 153

Query: 139 RLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARV 174
              G + A      G+G    K  +    +AL A V
Sbjct: 154 VEMGFTAAAIGEIAGVGMEATKSRIRYANQALKACV 189