Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 190 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score =  140 bits (352), Expect = 2e-38
 Identities = 80/178 (44%), Positives = 109/178 (61%), Gaps = 5/178 (2%)

Query: 5   EGHLRALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRR 64
           E  L+ L + GL G+ AA+   L  L   LR F R+R+    D++ED+VQ+ L+AVH +R
Sbjct: 14  EERLKDLFVRGLSGNNAAYQTFLGELSSYLRAFLRKRLIRLPDEVEDLVQEALLAVHNQR 73

Query: 65  ATYDPERAFTAWLYAVARYKMIDHFRRVG----RLRPIDDLADSLVADEFEASSIARLDI 120
            TYDP +  +AW+ A+ARYK++D FRR      R   +DD  D   + + EA+  AR D+
Sbjct: 74  HTYDPSQPLSAWVQAIARYKLVDLFRRRAIYEQRNDTLDDGMDLFSSADAEAAE-ARRDL 132

Query: 121 NDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHGAV 178
           N LL  LP      I   +LEGLSV EAA   G+ ES +KV VHRGLKAL A++ GA+
Sbjct: 133 NKLLADLPDHFRLPIMHTKLEGLSVREAADVSGMSESAIKVGVHRGLKALAAKIRGAL 190