Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 222 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 45.4 bits (106), Expect = 7e-10
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 20/165 (12%)

Query: 19  DAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTA-WL 77
           D AA   L    +P +R F  +R+      + D+VQ+T+  V T+   Y+ ++   A W+
Sbjct: 56  DKAAFGYLFSHFMPKIRAFGLQRLNQQGLAM-DLVQETMTTVWTKSHLYNADKGSVATWV 114

Query: 78  YAVARYKMIDHFRRVGRLR---------PIDDLA---DSLVADEFEASSIARLDINDLLE 125
           + + R +  D  RRV   R         P+ D+A   D+    +  A  +A LD      
Sbjct: 115 FTIMRNQCFDMLRRVQHNREDAFGDDIWPLYDVAVNQDNNPDHKLTAKLLAHLD------ 168

Query: 126 QLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKAL 170
            LP  Q ++++ I ++ L+  E A A  +    +K  +  GL+ L
Sbjct: 169 ALPLAQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKL 213