Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 196 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Paraburkholderia bryophila 376MFSha3.1

 Score =  130 bits (328), Expect = 1e-35
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 5/177 (2%)

Query: 5   EGHLRALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRR 64
           E  L+AL+   + GDA A+A+ LR+L   LRG  RRR+R  +DD+ED++Q+ L A+H   
Sbjct: 19  EERLKALLHRAIDGDATAYASFLRILSGYLRGMLRRRLRAYEDDVEDVLQEVLFALHNGL 78

Query: 65  ATYDPERAFTAWLYAVARYKMIDHFR----RVGRLRPIDDLADSLVADEFEASSIARLDI 120
            TY  +   TAW  A+ R+K+ D  R    R     PI D A+     E E S  AR DI
Sbjct: 79  HTYRNQVPLTAWASAIVRHKVADFLRARAHREALHDPIVDDAELFAVSETE-SLDARRDI 137

Query: 121 NDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHGA 177
             LLE+LP +Q   I  +RL G+SVAE A   G+ E+ VKV +HRG+KAL   + G+
Sbjct: 138 GSLLERLPERQRAPIEHVRLHGMSVAETAKLTGLSEAAVKVGIHRGIKALSRLIRGS 194