Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 173 a.a., RNA polymerase sigma-E factor (sigma-24) protein from Sinorhizobium meliloti 1021

 Score =  108 bits (269), Expect = 8e-29
 Identities = 66/170 (38%), Positives = 97/170 (57%), Gaps = 5/170 (2%)

Query: 7   ASAQAPRLSDAEFKAALAAVLPQLRAFARSLAGNRDTADDLVQETMLKAWRARERYVAGT 66
           AS Q+P L +      +  ++P LRAFAR+       ADDLVQET+L+A R+ E++  GT
Sbjct: 8   ASRQSPLLEEQ-----VVDLIPALRAFARTFTSASFEADDLVQETLLRALRSIEQFEPGT 62

Query: 67  NFRAWAFVILRNHFLSEMRRRRFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPV 126
           + ++W F I+RN F ++ + R          A+  +     QE SV   ++  AL  L  
Sbjct: 63  SLKSWLFTIMRNAFRTQYKIRTRESPGSTNCAELPIPTAPSQEWSVLNGELRSALGALSP 122

Query: 127 PQREALILVGAGGISYEETAEIIGVAVGTIKSRVARARVALEALLNGGSL 176
             RE L+LV   G+SY+E A+I   A+GTIKSR++RAR  L A ++G  L
Sbjct: 123 EHREVLVLVAGFGMSYKEAADICDCAIGTIKSRLSRARDELTAQMHGNPL 172