Pairwise Alignments

Query, 840 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) / Cytochrome c oxidase polypeptide III (EC 1.9.3.1) from Sphingobium sp. HT1-2

Subject, 541 a.a., cytochrome c oxidase, subunit I, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  349 bits (896), Expect = e-100
 Identities = 179/488 (36%), Positives = 282/488 (57%), Gaps = 12/488 (2%)

Query: 37  NNNRVGVWYVLTAFGFMLFAGVLALIMRTQLAVPDNDLVGPGTFNQLFTLHGSMMMFLFA 96
           ++ R+G+ Y+    GF L   +L  ++R +L  P   ++   T+N +FTLHG +M+FL  
Sbjct: 30  DHKRIGIMYLCGIMGFFLVGLLLGFLVRLELIAPGPTIMDAQTYNTVFTLHGVIMIFLVV 89

Query: 97  VPMFEAV-SIILLPQLLGARDLPFPRLSAFGYWSFLIGGLFVGGSIFFN-AAPDGGWFMY 154
           +P   A    I+LP  +GA D+ FP+L+ F +W ++IG L    S+F     PD GW  Y
Sbjct: 90  IPSIPAAFGNIILPIQIGAEDVSFPKLNNFSFWLYVIGALMALSSLFTGKGGPDTGWTFY 149

Query: 155 PPL--TTRTDLSGLGADIWMLGLSFIEVSSVAAAVELIVGVLKCRPPGMRLNLMPLYAWY 212
            P   TT T++S     +++LG S     S+   +  I  + + R PGM  + +PL+ W 
Sbjct: 150 VPFSQTTSTNVSAAVLAVFVLGFS-----SILTGLNFITTIHRLRAPGMTWDRLPLFVWS 204

Query: 213 ILVVAVMILFAFPPLIAGDILFEMERLLDWPFFDARRGGDPLLWQHLFWIFGHPEVYIIF 272
           +     + + A P L    +L   ER+L    FD  RGGDPLL+QHLFWI+ HP VYI+ 
Sbjct: 205 LYATGWIQVLATPVLGITVLLIFAERVLGVGLFDPSRGGDPLLYQHLFWIYSHPAVYIMI 264

Query: 273 LPSIALFAMLVPTFANRHLLGYPWIVLAAVGTAFLSFGLWVHHMFTTGLPKISLAFFSAA 332
           LP++ + + ++P FA +++ GY  I L+++  AF    +W HHMFT+G+   ++  FS  
Sbjct: 265 LPAMGVISDILPVFARKNIFGYKMIALSSLAIAFAGSLVWAHHMFTSGMSDTAVLVFSFL 324

Query: 333 SEAVAIPTGVQIFVFIATLWAGRVTWSTPLLYATGSLAIFVIGGLTGVMVAVAPFDWQAH 392
           +  VAIP+ +++F +++TL+ G +    PL YA   + +F IGGLTG+++  A  D   H
Sbjct: 325 TFVVAIPSAIKVFNWVSTLYKGSIRIEPPLWYALAFIFLFSIGGLTGLVLGSAGTDIHVH 384

Query: 393 DSYFIVAHLHYVLIGGTLMPLFAGLYYYWPLVTGKKLSDRLGRVAFWMLFVGANLTFFPM 452
           D+YF+VAH HYV+ GG    LF  ++Y++P + G+    R   +A ++ FVG N+ +FPM
Sbjct: 385 DTYFVVAHFHYVIFGGLGFGLFGAMHYWFPKIFGRMYDKRTATLACFITFVGFNVLYFPM 444

Query: 453 HLSGLMGMPRRVFTYPAELGLGGLNMASTLGAWLFAAGVAVICVDLSLSPRRVRAV-RNP 511
            + G+ GMPRR + Y  +   G  +  ST+G+W+ AAG+ ++  +L    R   A   NP
Sbjct: 445 FVIGMQGMPRRYYDYLPQYTTG--HFISTMGSWVLAAGILLMFWNLWRGSRNGPAAGDNP 502

Query: 512 WNAGTLEW 519
           W   TLEW
Sbjct: 503 WGGATLEW 510



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 707 PMLALFLGIASWLLTLGAREVHVRKHVGMARLC-----LMVALLLGLAGIGAGLAGPWTH 761
           PM     GIASWL +         K +G+  LC      +V LLLG   +   L  P   
Sbjct: 14  PMAGTKGGIASWLFSTD------HKRIGIMYLCGIMGFFLVGLLLGFL-VRLELIAPGPT 66

Query: 762 GMDPQAHS 769
            MD Q ++
Sbjct: 67  IMDAQTYN 74



 Score = 25.4 bits (54), Expect = 0.009
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 25/113 (22%)

Query: 676 FSGLVFGYFFFWTRHADFPPVALADGPGMAWPMLALFLGIASW-LLTLGAREVHVRKHVG 734
           FS ++ G  F  T H           PGM W  L LF+    W L   G  +V     +G
Sbjct: 172 FSSILTGLNFITTIHR-------LRAPGMTWDRLPLFV----WSLYATGWIQVLATPVLG 220

Query: 735 MARLCLMVALLLGLAGIGAGLAGPWTHGMDPQAHSYPAIVWTLAIWAAAHAGV 787
           +  L +    +LG+     GL  P + G DP       +++    W  +H  V
Sbjct: 221 ITVLLIFAERVLGV-----GLFDP-SRGGDP-------LLYQHLFWIYSHPAV 260