Pairwise Alignments

Query, 377 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (373), Expect = 3e-40
 Identities = 102/375 (27%), Positives = 177/375 (47%), Gaps = 11/375 (2%)

Query: 5   RRALTREVHHLRRDRWDLAGITLLPGFLIFIVAALFWQGPLRQVPLGIVDGDGSTASRAV 64
           + A+ R+   LR D+W  + +T +P  L   +  +F QG  R +P G+VD   S  SR +
Sbjct: 7   KHAIPRQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQL 66

Query: 65  IRALDASPLIRFGGYYPGEVDAVRAVRSGKIMGFAHIPAGLGESVARHREPVVRILYNGS 124
           IR +DA+  +    ++    +A +A+RS +I GF  IPA   +++ R  +P V   YN  
Sbjct: 67  IREVDATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQ 126

Query: 125 FLTAGGQVARAAEEA--VTEALPEIAAN-QLPNHAVPASRVRRLAV--EATPLGNAPSSF 179
            +  G  V  A  +A     A  ++  N     H   A+  R + V  + TPL N  +++
Sbjct: 127 MILVGKLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNY 186

Query: 180 EWFLGLLIFPAVLHLIAACVCAMAIGRELKGKSLSEWARASGGVAPAMAGKMLPYVLAIS 239
             FL   I PA+  +       + +    +   L  W   S      +   +LPY+    
Sbjct: 187 AQFLVSAIVPALWQITIVVSTILILAANYRHYGLKSWLAQS--PLTQLTRTLLPYLPIFM 244

Query: 240 GWGLAWLLYLTLARGWRIEGSILLIACGQTLFYAATAAVAALLVAVTSETATALSASAVY 299
             GL +L++      W + G    +   Q++   A   + A    +T + A A+S +  +
Sbjct: 245 LQGLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAF 304

Query: 300 AGSALAYSGATLPLNGGNAFARTWSNVLPLTHYIALQMGQVS-GQAVAAAVAPMVSLMAY 358
              + A+ G T P +  N  A+ W N+LP++HYI +Q+ QVS G    +++ PMV++  Y
Sbjct: 305 TAPSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGY 364

Query: 359 VVIAGGGALAFIMVR 373
           ++  G   LA +++R
Sbjct: 365 LLPLG---LALLLIR 376