Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 58.9 bits (141), Expect = 6e-14
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 19/151 (12%)

Query: 34  ARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAWAFVIL----RNHFLSEMRRK-- 87
           +R ++ + D AD + QE  +KA+RA   +   + F  W + I     +NH +++ RR   
Sbjct: 38  SRYVSNSGDVAD-VAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPA 96

Query: 88  --------RFVGEWDELVADRVLAAPADQEKSVELRD-MMRALMQLPVPQREALILVGAG 138
                    F    D L   + L+ P +   S EL+  +  A+  LP   + A+ L    
Sbjct: 97  SDVDAEEAEFYEGGDAL---KELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELD 153

Query: 139 GISYEETAEIVGVAVGTIKSRVARARVALEQ 169
           G+SYEE AE++   VGT++SR+ RAR A+E+
Sbjct: 154 GLSYEEIAEVMDCPVGTVRSRIFRAREAVEK 184