Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 74.7 bits (182), Expect = 1e-18
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 7/158 (4%)

Query: 18  EFKAQLAAVLPQLRAFARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAWAFVILR 77
           +++A + A    L  +A  L  +R  A+DLVQET L+AW++ +  +     +AW   ILR
Sbjct: 26  KYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILR 85

Query: 78  NHFLSEMRRKRFVGEWDELV--ADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILV 135
                   RK+F     +LV   D    A    ++  +   + R +++L V  RE L L 
Sbjct: 86  RENARRFERKQF-----DLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQ 140

Query: 136 GAGGISYEETAEIVGVAVGTIKSRVARARVALEQLLDG 173
             GG S EE A+I+ +   T+ +R+ RAR  L++++DG
Sbjct: 141 VVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDG 178