Pairwise Alignments

Query, 652 a.a., TonB-dependent receptor from Sphingobium sp. HT1-2

Subject, 943 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (281), Expect = 6e-29
 Identities = 167/660 (25%), Positives = 250/660 (37%), Gaps = 73/660 (11%)

Query: 20  DPNGDGVADNDPNGDGLAGTYIADLRYQRLRERRKRLGANVVLQWRPTDELELSLDTVYA 79
           +  GD     D   D  A   +A +  +     R+RLG  V   +RP+D+ +L L T+Y+
Sbjct: 325 ETGGDWAFAEDSGFDDAA---LASVDARDYEINRERLGVGVNFDYRPSDDTDLYLRTLYS 381

Query: 80  AGKAKRRRNWFAVALTSNGADYVDYSFSPNEVLVAGTVRRPLQGNDERLTIKDDSLSSAL 139
                     F    T N A     S    + L  G   R L+   E   I    L    
Sbjct: 382 E---------FDDTETRNSAKTKWKSAQQADALSQGKTTRSLKSRTENQNITSFVLGG-- 430

Query: 140 NLRYEKGPWTIKAEGSYSDAQLNYNQTYVRTQTRASYLTSFDFTGGG---VPQLTLPSGV 196
             R+++  WT   + S+S A         R    A ++   D TG      PQ+  P   
Sbjct: 431 QTRFDR--WTFDYQASHSSASAEKP----RDIAGADFVAKIDNTGFSNTQTPQIIAPE-- 482

Query: 197 DLLDPSLYNYSNFFDNRFESNAKEYAGRVDLRYAIESGVLDSFEVGGRIAKLKTARNSLL 256
                  Y  +NF  +  E  A +    ++   A+   +     +G   A++KT     +
Sbjct: 483 -----DYYQNANFELDEIEIAASKAEDTIN---AVNVDLTRQLTLGDYSAEVKTGVK--V 532

Query: 257 SQLTSSVRLTDRDAALYE------VGSFPDLLGGKAPFAQSYLVGNPFGTGADFA--CEA 308
           S+   S R    D  +Y       V     LL   A     Y +G  FGTG D     E 
Sbjct: 533 SRRDKSNR---EDIWIYSDLGDQGVSDDALLLSQYAGNELDYSLGR-FGTGIDSTPVWEL 588

Query: 309 ILGSCTPRVLDPTAS----YKLDEVTKAGYVKLNLKGDLGSIPFSGNIGLRYTRTDRDAV 364
           +         D   S    + + E   A Y+  ++  D+G +      GLR  +   D+ 
Sbjct: 589 VNSLDADDNRDEVESTINDFDITEDINAAYLMGHM--DIGKLRIL--TGLRVEQNQWDST 644

Query: 365 -SALRRADGTFQPVTASPSYEDWLPSAVLKFDLTDQLVARVGAAKVVGLPDSQDLSPGLL 423
            S    A   F  +  S   + WLP+  L +  TD  V R      +  P    L+PG L
Sbjct: 645 GSGYDGAKDEFIDINHSSDEDHWLPALHLTYRYTDNTVLRAAWTNTLVRPTFGQLAPGYL 704

Query: 424 LNRIV--YTGTGGNPNLKPFRADQYDVSLEWYFRQGSALTVGLFYKDIGSFLTTRSTFED 481
           L         T GNP LK   +   D+SLE YF     ++ GLFYKDI +F+  ++    
Sbjct: 705 LEEDDGDIDLTFGNPQLKSLESMNVDLSLEHYFGNIGLISAGLFYKDIENFI-YQADLAG 763

Query: 482 VPGETQQFLVTRKVNGEGGKLKGAEVMLQLPFNFLDGFASGFGILANYSYIDSSTPFVNA 541
           +            VNG+   + G E+     F+FL    +   + +N +Y DSS      
Sbjct: 764 LGDYVDAHSAVTFVNGDSADIYGLELSYVQEFHFLPEPFNALVLNSNLTYTDSSANISWI 823

Query: 542 RTGATL----PLEGLSKHNANLVGYYEKDGFGLRVAYNYRSGYLDSVTAGGEGSFFKPYE 597
             G  L    P+   S   ANL   YE     + ++  Y+S YL  VT   +      Y+
Sbjct: 824 EDGQLLSRDIPMPSQSDLTANLSLGYENSYASVWLSAAYKSEYLQEVTELSD-ERLDLYQ 882

Query: 598 TIDASIRYDFGA-------FGIYAEAGNLTNEKQIRYTGAPEAIALYAEQGRRFAIGANF 650
             D  +++DF A         +Y +  NLT+E    YTG     A Y   GR F +G  +
Sbjct: 883 --DNHLQWDFVAKAHLTSNVTLYFKGVNLTDEPYYSYTGNSAYNAQYEAYGRTFQLGLQY 940