Pairwise Alignments

Query, 505 a.a., GAF domain/GGDEF domain/EAL domain protein from Sphingobium sp. HT1-2

Subject, 1288 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 82.0 bits (201), Expect = 1e-19
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 147 LLARQVMVELEGRRR-----DRDVIAQQRLDAAAVADSDRMFRTLADTMPQMVWSTLPDG 201
           +L R + +  +G+ R     + DV A  +    ++    R ++ L +   Q+VWS    G
Sbjct: 233 VLCRAMAIRNDGQVRRIIGTNTDVTAISQAQHQSLQTEAR-YKALVEASAQIVWSCNARG 291

Query: 202 YHDYYNARWYEYTGVPAGSTDGDAWNGMFHADDQPKAWEKWRHSLASGDPYEIEYRLRHR 261
                +  W  YTG  +   DGD      H +D+ +   +WR +L+     E+++RLRH 
Sbjct: 292 EIFEDSPSWQAYTG--SSMADGDLRLASIHPEDKEELARRWRQALSQNSILEMDHRLRHH 349

Query: 262 DGLYRWTLGRALPIRDAQGQIIRWIGTCTEIHEQKL 297
            G +RWT  RA+P+R A G+I  W+G   +IH++KL
Sbjct: 350 SGQWRWTHCRAVPLRLANGRIGAWVGMNIDIHDKKL 385



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 87/404 (21%), Positives = 153/404 (37%), Gaps = 71/404 (17%)

Query: 150 RQVMVELEGRRRDRDVIAQQRLDAAAVADSDRMFRTLADTMPQMVWSTLPDGYHDYYNAR 209
           RQ  VELE  R   + + + R  +A +  S+   R          W          Y+  
Sbjct: 511 RQTQVELEQHRDKLEQLVESR--SAELRASEARLRLAIAAAGLGAWE---------YDPE 559

Query: 210 WYEYTGVPAGSTDGDAWNGMF-------HADDQPKAWEKWRHSLASGDPYEIEYRLRHRD 262
              +    +G+T  D   G F       H +D+    +    +L +   +  EYR+  + 
Sbjct: 560 LECHLPALSGNTLFDLHQGSFAEFLQAIHPEDREAMAQAMGQALHTEGRHLFEYRVLQQ- 618

Query: 263 GLYRWTLGRALPIRDAQGQIIRWIGTCTEIHEQK-------LMLEEREMIAH-------E 308
           G  RW +     ++  QG++ + +GT  +I E++          E  E +A         
Sbjct: 619 GTCRW-VADTFDVQRRQGRL-QVVGTLQDITERRQADATREAAREAAEQLARIKSEFLAN 676

Query: 309 LSHRIKNIFSVIAGLIGLSARERP------GMQEGADDLRDRILALGRAHDFVRTHGGGV 362
           +SH I+   + I G   L  RE P      G Q   D  +  +  +    DF +   G +
Sbjct: 677 MSHEIRTPLNAILGFAQLGQRETPESRARIGFQRIHDAGQHLLGIINDILDFSKIEAGKM 736

Query: 363 SMADEQASLHGVLEEIFA-------PYGGRERLQLSGDNPPIDDRSATPLALLFHELATN 415
            +  +  +   V++ +           G   R++ S + P   D  +  LA +   L  N
Sbjct: 737 KLEMQPTNPCEVVDHVVKLMAASVFQKGLELRVEESDNLPAAFDGDSLRLAQVLLNLLGN 796

Query: 416 AAKYGALSTPDGFIALHVVTQDEDILLDWREEG-GPSVAPI-------------ASEGFG 461
           A K+    T  G I L      +D++   R+ G G +   +             AS  FG
Sbjct: 797 ALKF----TDQGSITLREERDGQDLIYSIRDTGIGMNREQLGRLFHAFEQGHGGASRRFG 852

Query: 462 SRLIALSVERQL----GGQLERQWCP-EGLRLSLRIPRRSMHRA 500
              + L++ ++L    GG +E +  P +G   S+RIP  ++  A
Sbjct: 853 GTGLGLTITKRLVEMMGGSIEVESTPGQGTCFSIRIPMHNVVEA 896



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 56/213 (26%), Positives = 82/213 (38%), Gaps = 31/213 (14%)

Query: 115 LVGGDGEPLGALCVIDTVPRDDLTPLQRQGLSLLARQVMVELEGRRRDRDV----IAQQR 170
           L+  D   L  L   D V +D L  L    +  + R +    E +RR R      I  +R
Sbjct: 88  LMDEDAVDLLRLGASDFVLKDRLARL----MPAICRSIEESEEKQRRQRIERELEIVWER 143

Query: 171 LDAAAVADSDRMFRTLADTMPQMVWSTLPDGYHDYYNARWYEYTGVPAGS--TDGDAWNG 228
           LD A  A +D ++           W    +    Y + RW+   G          + W  
Sbjct: 144 LDLALTATNDGLWD----------WDLSSNAL--YLSPRWFTMLGYGENEYPCSLETWRQ 191

Query: 229 MFHADDQPKAWEKWRHSLASGDPYEIEY--RLRHRDGLYRWTLGRALPIRDAQGQIIRWI 286
             H DD  +A      +  +     IE   R+R +DG +   L RA+ IR+  GQ+ R I
Sbjct: 192 FIHPDDLTRAMAILSDATGATGRERIEQVLRMRSKDGTWHDVLCRAMAIRN-DGQVRRII 250

Query: 287 GTCTEI------HEQKLMLEEREMIAHELSHRI 313
           GT T++        Q L  E R     E S +I
Sbjct: 251 GTNTDVTAISQAQHQSLQTEARYKALVEASAQI 283