Pairwise Alignments

Query, 886 a.a., Excinuclease ABC subunit A paralog of unknown function from Sphingobium sp. HT1-2

Subject, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

 Score =  501 bits (1290), Expect = e-146
 Identities = 290/742 (39%), Positives = 413/742 (55%), Gaps = 74/742 (9%)

Query: 150 FSPNTVAGACPTCHGIGRVYDATEETMVPDDTLTIRERAVAAWPAA--WHGQNLRDILVS 207
           FS N  AGACPTC G+G       + ++ D  L++ + A+  W     ++ Q L  +   
Sbjct: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326

Query: 208 LGYNVDTPWRDLPKKDRDWILFTDEAPTVPVYAGLTPEQTRVALKRRMEPSYQGTFTGAR 267
             ++V TP+  L KK ++ IL           +G T  + +    R      +  F G  
Sbjct: 327 YDFDVHTPFNKLSKKIQEIILHG---------SGRTEIEFKYINDRGDIRLKKHPFEGIL 377

Query: 268 RYVLETFANTKSALMKKRVSQYIIGRDCPTCDGKRLKREALSVKFAGLDIAEFGDLTVLK 327
             +   + +T+S  +++ +++YI  + C +CDG RLK EA +V                 
Sbjct: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNV----------------- 420

Query: 328 LRDLLTPVAHGEYGGAAAVPKSHVLGKAARDAAVERRVAAGGSAHKSAPDVRRTPNLSDE 387
                                   +   A    VE  +A        A    +   L  +
Sbjct: 421 -----------------------FINDTALPTIVELSIA-------DALTFFQELKLEGQ 450

Query: 388 KRIAAQRLASELIERLEPLIDLGLGYISLDRSTPTLSSGELQRLRLATQLSSQLFGVVYV 447
           +   A+++  E+ +RL+ L+++GL Y++L RS  TLS GE QR+RLA+Q+ + L GV+YV
Sbjct: 451 RAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYV 510

Query: 448 LDEPSAGLHPADGEALLTILERLKAAGNSLFVVEHDLDVIRRAEWLVDVGPGAGEKGGEV 507
           LDEPS GLH  D E LL  L  L+  GN++ VVEHD D IR A+ ++D+GPGAG  GG V
Sbjct: 511 LDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMV 570

Query: 508 LYSGPIEGLANVETSITRRYLFAEP---LRSEHTPRDAKAWLRLEGIRRNNLHGLDVEFP 564
           +  G +E +     S+T +YL       +  + TP+DAK  + L+G   NNL  +D+  P
Sbjct: 571 VAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIP 630

Query: 565 IGCFTAVTGVSGSGKSSLVSQALPELVTEHLGGSPVAEEEDIDPLLDVAQNDTEGRIVAG 624
           +G FT VTGVSGSGKS+L++    ++    L G+  A                  R + G
Sbjct: 631 VGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPY-------------RSIQG 677

Query: 625 MEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDHVRRIFADTPLARRRHYSPGRFSFNVAQG 684
           +EH  +++ +DQ PIGRTPRSN +TY+G+F  +R +FA T  +R R Y PGRFSFNV  G
Sbjct: 678 LEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGG 737

Query: 685 RCPVCEGEGYVMVELLFLPSVFAPCSTCHGSRYNPQTLEVEWNGRNIAQVLELTVDDACD 744
           RC  C+G+G + VE+ FLP V+ PC  C G RYN +TLEV + G+ I +VL++TV+DA +
Sbjct: 738 RCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDARE 797

Query: 745 FFAGEASVMRSLDVLREIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGNTIYILDE 804
           FF     + R L  L ++GL Y+RLGQ AT LSGGEAQR+KLA EL +   G T+YILDE
Sbjct: 798 FFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDE 857

Query: 805 PTSGLHPSDGDRLMRHLRGLVEAGNTVVVVEHDMRAITQADWIIDLGPGAGEDGGRIVAS 864
           PT+GLH  D  +L+  L  L + GNTVVV+EH++  I  ADWIIDLGP  G+ GG I+A 
Sbjct: 858 PTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAE 917

Query: 865 GVPGVVAEAEGSLTARYLKAAL 886
           G P  VA+ E S TAR+LK  L
Sbjct: 918 GTPEDVAQIEASHTARFLKPLL 939



 Score =  136 bits (343), Expect = 5e-36
 Identities = 66/130 (50%), Positives = 97/130 (74%), Gaps = 2/130 (1%)

Query: 24  VQIRGARQNNLKNVDVDVPRNAFVVFTGISGSGKSSLAFGTLYAEAQRRYLESVAPYARR 83
           +++RGAR +NLKN+++ +PR+  +V TG+SGSGKSSLAF TLYAE QRRY+ES++ YAR+
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 84  LIDQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGSVTTLSSLVRMLYSRVGE--YPRH 141
            +     P+VD I+GL PA++++Q+  S N RS+VG++T +   +R+LY+RVGE   P H
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123

Query: 142 QPMLYAEDFS 151
           Q  L A+  S
Sbjct: 124 QVPLKAQTIS 133



 Score = 56.2 bits (134), Expect = 9e-12
 Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 24  VQIRGARQNNLKNVDVDVPRNAFVVFTGISGSGKSSLAFGTLYAEAQRRYLESVAPYARR 83
           V+++GA  NNLKNVD+ +P   F   TG+SGSGKS+L   T +  A        A     
Sbjct: 612 VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH------TALNGAT 665

Query: 84  LIDQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGSVTTLSSLVRMLYSRVGEYPR--H 141
               A    +  ++     + + Q       RS+  + T + + +R L++   E     +
Sbjct: 666 TATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGY 725

Query: 142 QPMLYAEDFSPNTVAGACPTCHGIGRVYDATEETMVPD 179
           QP      FS N   G C  C G G +    E   +PD
Sbjct: 726 QP----GRFSFNVRGGRCEACQGDGVI--KVEMHFLPD 757



 Score = 45.8 bits (107), Expect = 1e-08
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 546 LRLEGIRRNNLHGLDVEFPIGCFTAVTGVSGSGKSSLVSQALPELVTEHLGGSPVAEEED 605
           + + G R +NL  +++  P      +TG+SGSGKSSL   A   L  E        +   
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSL---AFDTLYAE-------GQRRY 53

Query: 606 IDPLLDVAQNDTEGRIVAGMEHVRRL---VRVDQKPIGRTPRSNLSTYSGMFDHVRRIFA 662
           ++ L   A+          ++H+  L   + ++QK     PRS + T + ++D++R ++A
Sbjct: 54  VESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113



 Score = 29.6 bits (65), Expect = 9e-04
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 670 RHYSPGRFSFNVAQGRCPVCEGEG 693
           R   P  FSFN   G CP C+G G
Sbjct: 260 RELEPRLFSFNNPAGACPTCDGLG 283