Pairwise Alignments

Query, 886 a.a., Excinuclease ABC subunit A paralog of unknown function from Sphingobium sp. HT1-2

Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

 Score =  477 bits (1227), Expect = e-138
 Identities = 281/744 (37%), Positives = 413/744 (55%), Gaps = 68/744 (9%)

Query: 150 FSPNTVAGACPTCHGIGRVYDATEETMVPDDTLTIRERAVAAWPA---AWHGQNLRDILV 206
           FS N+  GAC  C G+G   +   + ++PD    I + AVA +      +  Q+L  +  
Sbjct: 266 FSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVAN 325

Query: 207 SLGYNVDTPWRDLPKKDRDWILFTDEAPTVPVYAGLTPEQTRVALKRRM---EPSYQGTF 263
             G+ V TP +DL K+  D +++             +PE+    +       E S    +
Sbjct: 326 HFGFTVLTPIKDLSKEQLDILMYG------------SPEKIHFKVSNGSGDTEWSQNKPW 373

Query: 264 TGARRYVLETFANTKSALMKKRVSQYIIGRDCPTCDGKRLKREALSVKFAGLDIAEFGDL 323
            G     +  +  TKS   +K + +++    CP C GKRLK +AL+VK     I +  DL
Sbjct: 374 EGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDL 433

Query: 324 TVLKLRDLLTPVAHGEYGGAAAVPKSHVLGKAARDAAVERRVAAGGSAHKSAPDVRRTPN 383
           ++ K  +    +                                                
Sbjct: 434 SISKAEEFFNNL-----------------------------------------------K 446

Query: 384 LSDEKRIAAQRLASELIERLEPLIDLGLGYISLDRSTPTLSSGELQRLRLATQLSSQLFG 443
           L+D++   A+++  E+  RL+ L D+GLGY++L R + TLS GE QR+RLATQ+ S L G
Sbjct: 447 LTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTG 506

Query: 444 VVYVLDEPSAGLHPADGEALLTILERLKAAGNSLFVVEHDLDVIRRAEWLVDVGPGAGEK 503
           V+YVLDEPS GLH  D + L+  L +L+   N+L VVEHD D I  A+++VD+GPGAG  
Sbjct: 507 VLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVH 566

Query: 504 GGEVLYSGPIEGLANVETSITRRYLFAE-PLRSEHTPRDAKAWLRLEGIRRNNLHGLDVE 562
           GG+V+  G    ++  + S+T +YL  E  +      R +  +L+L   R+NNL  + VE
Sbjct: 567 GGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNRRKSDKFLKLSNCRQNNLKDVSVE 626

Query: 563 FPIGCFTAVTGVSGSGKSSLVSQALPELVTEHLGGSPVAEEEDIDPLLDVAQNDTEGRIV 622
            P G F  +TGVSGSGKS+L+ + L   + E +       E D +  L   +N  E   +
Sbjct: 627 IPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVGELDFEDQL--YENTKEKCNL 684

Query: 623 AGMEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDHVRRIFADTPLARRRHYSPGRFSFNVA 682
                + ++V +DQ PIGRTPRSN +TY+ +FD +R++FA+T  A+ + Y PGRFSFNV 
Sbjct: 685 EINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVK 744

Query: 683 QGRCPVCEGEGYVMVELLFLPSVFAPCSTCHGSRYNPQTLEVEWNGRNIAQVLELTVDDA 742
            GRC  C+G+G + +E+ FLP VF  C  C G+RYN +TLEV++ G++I+ VL ++V++A
Sbjct: 745 GGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMSVEEA 804

Query: 743 CDFFAGEASVMRSLDVLREIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGNTIYIL 802
            + F     +   L  L ++GLGY++LGQ +T LSGGEAQRIKL  EL +   GNTIY+L
Sbjct: 805 REHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLL 864

Query: 803 DEPTSGLHPSDGDRLMRHLRGLVEAGNTVVVVEHDMRAITQADWIIDLGPGAGEDGGRIV 862
           DEPT+GLH  D  +L+  L  LVE GNTVVV+EH++  I  AD IIDLGP  GE GG I+
Sbjct: 865 DEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEII 924

Query: 863 ASGVPGVVAEAEGSLTARYLKAAL 886
           A+G P  +A+ + S T ++LK  L
Sbjct: 925 ATGTPEEIAKCKLSHTGKFLKNIL 948



 Score =  132 bits (331), Expect = 1e-34
 Identities = 65/133 (48%), Positives = 96/133 (72%), Gaps = 4/133 (3%)

Query: 26  IRGARQNNLKNVDVDVPRNAFVVFTGISGSGKSSLAFGTLYAEAQRRYLESVAPYARRLI 85
           I+GAR++NLKN+ + +PRN  +V TG+SGSGKS++AF T+YAE QRRY+ES++ YAR+ +
Sbjct: 6   IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFL 65

Query: 86  DQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGSVTTLSSLVRMLYSRVG--EYPRHQP 143
                P+VD+I+GL PA+A+QQ+  S N RS+VG+VT +   +R+LY+R+G    P H  
Sbjct: 66  GLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEHN- 124

Query: 144 MLYAEDFSPNTVA 156
            +  E  SP  +A
Sbjct: 125 -IRIESQSPEKIA 136



 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 18/194 (9%)

Query: 24  VQIRGARQNNLKNVDVDVPRNAFVVFTGISGSGKSSLAFGTLYAEAQRRYL--ESVA--P 79
           +++   RQNNLK+V V++P   F V TG+SGSGKS+L +  LY   + +    ESV    
Sbjct: 610 LKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVGELD 669

Query: 80  YARRLIDQAGVP-EVDAIDGLPPAVALQQQRGSANARSSVGSVTTLSSLVRMLYSRVGE- 137
           +  +L +       ++    +   V + Q       RS+  + T +   +R +++   E 
Sbjct: 670 FEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKEA 729

Query: 138 -YPRHQPMLYAEDFSPNTVAGACPTCHGIGRVYDATEETMVPDDTLTIRERAVAAW---- 192
               + P      FS N   G C  C G G +    E   +PD  +   E   A +    
Sbjct: 730 KIKGYGP----GRFSFNVKGGRCENCQGDGVI--KIEMNFLPDVFVECEECKGARYNHET 783

Query: 193 -PAAWHGQNLRDIL 205
               + G+++ D+L
Sbjct: 784 LEVKYKGKSISDVL 797



 Score = 44.7 bits (104), Expect = 3e-08
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 548 LEGIRRNNLHGLDVEFPIGCFTAVTGVSGSGKSSLVSQALPELVTEHLGGSPVAEEEDID 607
           ++G R +NL  + +  P      VTGVSGSGKS++    +          S  A      
Sbjct: 6   IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFL 65

Query: 608 PLLDVAQNDTEGRIVAGMEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDHVRRIFA 662
            L++    D+       +E +   + + QK   + PRS + T + ++D++R ++A
Sbjct: 66  GLMNKPDVDS-------IEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113