Pairwise Alignments

Query, 387 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  137 bits (345), Expect = 5e-37
 Identities = 98/360 (27%), Positives = 165/360 (45%), Gaps = 11/360 (3%)

Query: 11  RETAFLRGSVWDLALVTWLPLLLLAIVAVQLSAGVMRNLPIVVVDEDGGGVARDLTRKLE 70
           R+   LR   W  + +TW+P+LL   +    S G+ R+LP  VVD     ++R L R+++
Sbjct: 12  RQWTLLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVD 71

Query: 71  ASPGLKVAARPPDMAQAEHLVRSNAAYAVVLIPRDLERTVLRGETGKILLFYNASY---- 126
           A+  L V+     + +A   +RSN  Y  ++IP   ++ + R E  ++  FYN+      
Sbjct: 72  ATSTLLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVG 131

Query: 127 STPSGSVLREVGTV-VQAHA-KALAGEQSAAIAGPARVRPQPVSVQSRILYNPQTSYELQ 184
              + +V++  GT   Q    K LA +    +A  A  R  PV  Q   L+N  T+Y   
Sbjct: 132 KLVNSAVVQAQGTFNAQVDVMKNLATKTHTTLA--AMGRSVPVRTQITPLFNQNTNYAQF 189

Query: 185 LVALIHPALLHLLFMIAVVSALGRELRDGTIGAWLAGPRGEAVAAVAGKIAPYILIFLLW 244
           LV+ I PAL  +  +++ +  L    R   + +WLA      +  +   + PY+ IF+L 
Sbjct: 190 LVSAIVPALWQITIVVSTILILAANYRHYGLKSWLA---QSPLTQLTRTLLPYLPIFMLQ 246

Query: 245 GALATGYLAVYRGWPVQGSVAMLMGGYLALYLAYAGMALFIVGATLSMGQALSMTALYAG 304
           G     +      WP+ G  + L+       +A   M  F    TL   +A+S    +  
Sbjct: 247 GLGFLIWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTA 306

Query: 305 ASFAFAGAIFPIESASAFARLWSALLPFTRFARLVAEQWMIGAPVLASLGSILALFAFLV 364
            SFAF G  FP    +  A+ W  LLP + +  +   Q   G   L+SL  ++ ++ +L+
Sbjct: 307 PSFAFMGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGYLL 366