Pairwise Alignments

Query, 377 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 388 a.a., HlyD-family protein from Sinorhizobium meliloti 1021

 Score =  188 bits (478), Expect = 2e-52
 Identities = 120/359 (33%), Positives = 197/359 (54%), Gaps = 7/359 (1%)

Query: 19  ILITACGQEKAPKKGPVEVGVVTLAAQNVTVSSELPARTVSTMQSEVRPQITGVIQKRLF 78
           +L+ + G   A + GPV VGV+T+  +NV+ + E   R  +    ++R ++ G +++RLF
Sbjct: 18  LLLCSAGDGVA-QTGPV-VGVMTVQVENVSPAHEFVGRVEALNAVDIRARVEGFLERRLF 75

Query: 79  TEGSMVTAGQPLYQIDERLYRASRDEAQAALVSAQATAVAAQAKAQRYRGLGDTEAVSAQ 138
            EG  V  GQ L+ ++   Y  + ++AQA LV AQ     A+ + QR R L     VS  
Sbjct: 76  AEGQNVEKGQDLFTLERTTYELALEDAQATLVGAQTNFDNAERQLQRNRALSQ-RTVSQA 134

Query: 139 DRDDVIATARQAAAAVGQARASLDTANVNLTFTQVRAPISGRIGRTLFTPGALVTASQTD 198
             ++  A    A A+V  A+  ++ A +NL +T ++API GRIGR  ++ G+LV+ S ++
Sbjct: 135 VIEESHAARDIARASVLSAQTRVNQAELNLGYTHIKAPIDGRIGRAAYSVGSLVSPS-SE 193

Query: 199 PLTTIQQLDPIYVDVTQSSSQLLQLRR-SLAAGK-TLPASATIRLKLDDGTEYPLEGRIE 256
           PL  + Q DPI V  + S   +L LR  +  AGK  L     ++L+L +G  Y   G++E
Sbjct: 194 PLARVVQTDPIRVVFSVSDRTILDLRTIAGGAGKDELAKGYALKLRLSNGEPYQQSGKLE 253

Query: 257 FAEPIVDVDSGTVTLRARFPNPDGMLLPGMFVRVVAPQSVVPGAILAPQQGIARDAKGNA 316
           F    +DV +GT+ +RA F N   +L+PG FV V+          + P   + +D +G  
Sbjct: 254 FFGNEIDVQTGTLPIRALFANAQSLLMPGQFVTVIVEPEEREERPVVPVGSVEQDREGR- 312

Query: 317 TALVVTKDNKVERRTVTAAQAIGDKWLITAGLKAGDRLIVEGTDKVQPDDKVKPVAVAA 375
             LVV  +++   R + A+  +G  W++  GL+ G++LIVEG  +V P   V+  +V+A
Sbjct: 313 FVLVVDGESRAAVRRIRASVQVGQNWVVEEGLQGGEKLIVEGLQRVSPGAVVEAQSVSA 371