Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1054 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

 Score = 1131 bits (2925), Expect = 0.0
 Identities = 577/1036 (55%), Positives = 757/1036 (73%), Gaps = 10/1036 (0%)

Query: 2    LSRFFIDRPIFAWVIAIGIMLAGLGGMLSLPVAQYPDIAPPGVGISATYPGASAETVETS 61
            +S+FFIDRPIFAWVIA+ IML G   +L LP+ QYP IAPP + I  TYPGASA+TV+ +
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDT 60

Query: 62   VTQVIEQQLTGIDGLMYFSSSSTSTGQSRITVTFQKGTDPDTAQVQVQNRVQQALSRLPS 121
            V QVIEQQL GID L Y SS S S G   IT TF++GT+ DTAQVQVQN++  A   LP 
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120

Query: 122  AVQQQGLSVTKQQTDFLMLVGLYDETDNATQADIADYLVNNFQDSIARIDGIGATQIFGS 181
             VQQQG+ VTK   +FLM++G+     + T+ D+++Y+V+N QD I+R  G+G  Q+FG+
Sbjct: 121  EVQQQGIRVTKSVRNFLMVIGVVSRDGSMTREDLSNYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 182  QYAMRIWLDPYKLAAVKLMPSDVETAIKAQNIEVSAGQIGADPAPANQQINATVTARARL 241
            QYAMRIWLDP KL    L P DV TAI AQN+++++GQ+G  PA   QQ+NAT+  + RL
Sbjct: 181  QYAMRIWLDPAKLNNFNLTPVDVSTAITAQNVQIASGQLGGLPAMPGQQLNATIIGKTRL 240

Query: 242  ETPDQFRNIVVKTQSDGSVVHLSDVARVELGNESYTTSARLNGHPASGMALQLAPGADAL 301
            +T +QF+ I++K   DGS V + DVA V LG E+Y+ +A+ NG PASG+A++LA GA+AL
Sbjct: 241  QTAEQFKAILLKVNPDGSQVRVGDVADVALGGENYSINAQFNGAPASGLAVRLATGANAL 300

Query: 302  KTAELVKARVAELGGNLPHGYKIVYPRDTTPFIKLSVEEVVQTLIEAVVLVVIVMFVFLQ 361
             TA+ ++  V +L    P G ++V+P DTTP +  S++ VV+TL+EA+VLV +VMF+FLQ
Sbjct: 301  DTAKALRKTVDDLKPFFPQGLEVVFPYDTTPVVSESIKGVVETLVEAIVLVFLVMFLFLQ 360

Query: 362  SWRATLVPAIAVPVVLLGTFGILALFGYSINTLTLFGMVLSIGLLVDDAIVVVENVERIM 421
            ++RAT++  + VPVVLLGTFGILA FG+SINTLT+FGMVL+IGLLVDDAIVVVENVER+M
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 422  EEEGLSPRDATIKSMMEIGSALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSSMLL 481
             EEGLSP++AT KSM +I  ALVGIALVLSAVLLPMAFFGGSTGVIY+QFSITIVS+M L
Sbjct: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480

Query: 482  SVVVALILSPALCATMLKPIDKAHR---EKGWFGKFNRWFERLTNGYVRRTQGVIGKRGI 538
            SV+VALI +PALCATMLKPI K      ++G+FG FNR F+R    Y R    ++  +  
Sbjct: 481  SVLVALIFTPALCATMLKPIPKGEHGTPKRGFFGWFNRTFDRGVRSYERGVGNMLKHKAP 540

Query: 539  FWGLYVVVLGILVVLFMRLPTSFLPVEDQGQVMVQVTLPSGAKSSRTNAAIDQVQSYFLN 598
            +   Y++++  +V LF R+PT+FLP EDQG +  QV  P+G+ + RT   +D+++ + L 
Sbjct: 541  YLLAYIIIVVGMVWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDKMREFLLR 600

Query: 599  DEK-----DNVAFAFIMTGFSFQGQGENVGQGFINLAPWDDRKGKTNEAGTIANRATKQL 653
              K     D VA  F +TGF+F G+G++ G  FI L PW++R    N    IA RA +  
Sbjct: 601  PSKDGGEGDGVASVFTVTGFNFAGRGQSSGLAFIMLKPWEERNA-DNTVFKIAGRAQQHF 659

Query: 654  GAIRDAKVLAMTPPAIRGLGQSNGFTFELLNSGGLSRERFLELRNQLIASAQQDPVLAGV 713
               RDA V A  PPA+  LG + GF   L +  G+  E+ +E RNQ +  A Q  +LA V
Sbjct: 660  FTFRDAMVFAFAPPAVMELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMASQSKILAQV 719

Query: 714  RAASLEDTPQLKIDIDTEKLTVLGLTQANVDDVLSSAWGSTYVNDFVDRGRVKRVYMQAD 773
            R   L D PQ +++ID EK + LG+T + +++ LS A GS YVNDF+DRGRVKRVY+Q  
Sbjct: 720  RPNGLNDEPQYQLEIDDEKASALGITLSEINNTLSIALGSNYVNDFIDRGRVKRVYVQGQ 779

Query: 774  APYRALPSDLDNWMVRSSTTGEMVPFSAFATSHWVMGPSSVQRFNGLSSFEIQGQSAPGA 833
               R  P DL  W VR+S  G MVPFSAFA   WV G   + R+NG+ + EI G  APG 
Sbjct: 780  PNSRMSPEDLKKWYVRNS-AGTMVPFSAFAKGEWVYGSPKLARYNGVEAMEILGTPAPGY 838

Query: 834  SSGDAMDRMVALQKQLPAGTSYAWSGLSYQEQLSGGQAPLLYGLSVLVVFLCLAALYESW 893
            S+G+AM  +  + K+LPAG   +W+GLSY+E+LSG QAP LY LS+L+VFLCLAALYESW
Sbjct: 839  STGEAMAEVETIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESW 898

Query: 894  SIPLSVLLVIPLGLIGAVLAVTLRGLENNIFFQVGLLTTMGLAAKNAILIVEFAELAHRN 953
            SIP++V+LV+PLG+IGA++A +LRGL N+++FQVGLLTT+GLAAKNAILIVEFA+  H  
Sbjct: 899  SIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQ 958

Query: 954  GRNALEAALEAARLRFRPILMTSLAFIAGVIPLAIATGAGAQSRVAIGTAVVGGMVTATV 1013
            GR  +EAA+EA R+R RPI+MTSLAFI GV+PLAI+TGAG+ S+ AIGT V+GGM+TAT+
Sbjct: 959  GRTLMEAAIEACRMRLRPIIMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMLTATI 1018

Query: 1014 LAIFYVPLFFVSIARL 1029
            LAIF+VPLFFV+++ +
Sbjct: 1019 LAIFWVPLFFVTVSSI 1034