Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1047 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Pseudomonas syringae pv. syringae B728a

 Score =  976 bits (2524), Expect = 0.0
 Identities = 505/1040 (48%), Positives = 710/1040 (68%), Gaps = 12/1040 (1%)

Query: 2    LSRFFIDRPIFAWVIAIGIMLAGLGGMLSLPVAQYPDIAPPGVGISATYPGASAETVETS 61
            +S FFI RP FAWV+A+ I+LAGL  + SLPVAQYPD+APP + I+ATYPGASA+ +  S
Sbjct: 1    MSLFFIKRPNFAWVLALFILLAGLMALPSLPVAQYPDVAPPQITITATYPGASAKVLVDS 60

Query: 62   VTQVIEQQLTGIDGLMYFSSSSTSTGQSRITVTFQKGTDPDTAQVQVQNRVQQALSRLPS 121
            VT VIE +L G  G++Y+ S+S STG + I VTF  GT+PD AQV+VQNR+++A +RLP 
Sbjct: 61   VTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQNRIKKAEARLPQ 120

Query: 122  AVQQQGLSVTKQQTDFLMLVGLYDETDNATQAD---IADYLVNNFQDSIARIDGIGATQI 178
             V  QGL V +  + FL++  L +  D A   D   +ADY   N  + I+R++G+G  Q 
Sbjct: 121  TVLSQGLQVEQASSGFLLIYTL-NYKDGAASKDTVALADYAARNVNNEISRVNGVGRLQF 179

Query: 179  FGSQYAMRIWLDPYKLAAVKLMPSDVETAIKAQNIEVSAGQIGADPAPANQQINATVTAR 238
            F ++ AMR+W+DP KL    L   DV  AI+AQN++V AG  G+ PA + Q++ AT+  +
Sbjct: 180  FAAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPASSLQELTATLAVK 239

Query: 239  ARLETPDQFRNIVVKTQSDGSVVHLSDVARVELGNESYTTSARLNGHPASGMALQLAPGA 298
              L+ P++F  IV++   DGS VHLSDVARV +G++ Y+  +RLNG  A   A+QL+PGA
Sbjct: 240  GTLDNPEEFGRIVLRANEDGSAVHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGA 299

Query: 299  DALKTAELVKARVAELGGNLPHGYKIVYPRDTTPFIKLSVEEVVQTLIEAVVLVVIVMFV 358
            +A++TA  V+ R+ EL  N P G     P DT+ F+ +++++V+ TLIEA+VLV +VMF+
Sbjct: 300  NAIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFL 359

Query: 359  FLQSWRATLVPAIAVPVVLLGTFGILALFGYSINTLTLFGMVLSIGLLVDDAIVVVENVE 418
            FLQ+ R TL+P I VPV L GT  I+ L G+S+N +T+FGMVL+IG+LVDDAIVVVENVE
Sbjct: 360  FLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENVE 419

Query: 419  RIMEEEGLSPRDATIKSMMEIGSALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSS 478
            RIM EEGLSP  AT+K+M ++  A+ GI LVL+AV LP+AF GGS GVIY+QFS+++  S
Sbjct: 420  RIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVS 479

Query: 479  MLLSVVVALILSPALCATMLKPIDKAHREK-GWFGKFNRWFERLTNGYVRRTQGVIGKRG 537
            +L S  +AL  +PALCAT+LKPI   H EK G+FG FNR F + T+ Y R +  +I + G
Sbjct: 480  ILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFGGFNRLFGKFTHRYERVSSSMIKRAG 539

Query: 538  IFWGLYVVVLGILVVLFMRLPTSFLPVEDQGQVMVQVTLPSGAKSSRTNAAIDQVQSYFL 597
             +  LYV ++G+L   ++RLP SF+PVEDQG +++ V LP GA  SRT+     +++Y L
Sbjct: 540  RYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLIIDVQLPPGATRSRTDLTAQLLENYML 599

Query: 598  NDEKDNVAFAFIMTGFSFQGQGENVGQGFINLAPWDDRKGKTNEAGTIANRATKQLGAIR 657
            + E        ++ GFSF G GEN G  F  L  W +R  K   A   A    +    + 
Sbjct: 600  SREATGA--VTMLLGFSFSGMGENAGLAFPTLKDWSER-AKGQSAAEEAVAFNQHFAGLG 656

Query: 658  DAKVLAMTPPAIRGLGQSNGFTFELLNSGGLSRERFLELRNQLIASAQQDPVLAGVRAAS 717
            D  V+A+TPP I GLG S GF+  L +  GL RE  L  R++L+  A  +P +       
Sbjct: 657  DGTVMAVTPPPIDGLGTSGGFSLRLQDRAGLGREALLAARDKLLGEANGNPKILYAMMEG 716

Query: 718  LEDTPQLKIDIDTEKLTVLGLTQANVDDVLSSAWGSTYVNDFVDRGRVKRVYMQADAPYR 777
            L + PQL++ ID EK   LG++  ++++ LS+A+GS+ ++DF + GR +RV +QA+   R
Sbjct: 717  LAEAPQLRLSIDREKARALGVSFESINNALSTAFGSSVISDFANAGRQQRVVVQAEQSAR 776

Query: 778  ALPSDLDNWMVRSSTTGEMVPFSAFATSHWVMGPSSVQRFNGLSSFEIQGQSAPGASSGD 837
              P  +    V +S +G +VP  AF ++HW  GP  + R+NG  +F I G +APG S+G+
Sbjct: 777  MTPESVLKLYVPNS-SGTLVPLGAFVSTHWEQGPVQIARYNGYPAFRISGDAAPGVSTGE 835

Query: 838  AMDRMVALQKQLPAGTSYAWSGLSYQEQLSGGQAPLLYGLSVLVVFLCLAALYESWSIPL 897
            AM  +  +  +LP G  Y W+GLSYQE+++ GQA  L+GL++LVVFL L ALYESW+IPL
Sbjct: 836  AMAEIERIVSKLPQGIGYEWTGLSYQERVASGQAAGLFGLALLVVFLLLVALYESWAIPL 895

Query: 898  SVLLVIPLGLIGAVLAVTLRGLENNIFFQVGLLTTMGLAAKNAILIVEFAELAHRNGRNA 957
             V+L++P+G +G+VLAVT  G+ N+++F+VGL+T +GLAAKNAILIVEFA+     G + 
Sbjct: 896  VVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWDQGHSL 955

Query: 958  LEAALEAARLRFRPILMTSLAFIAGVIPLAIATGAGAQSRVAIGTAVVGGMVTATVLAIF 1017
             +AAL+AARLRFRPI+MTSLAFI GV+PL +ATGAGA S+ AIGT V+GGM++AT+L + 
Sbjct: 956  RDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLSATLLGVV 1015

Query: 1018 YVPLFFVSIARLFGMDKKKP 1037
             VP+FFV +  +    ++KP
Sbjct: 1016 LVPIFFVWVLSVL---RRKP 1032