Pairwise Alignments

Query, 349 a.a., Transcriptional regulator, AraC family from Sphingobium sp. HT1-2

Subject, 345 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 89/348 (25%), Positives = 139/348 (39%), Gaps = 37/348 (10%)

Query: 21  GQMRAANLRGFSDYVRARGGAPRRILAQHGLDPMVLADPDSHIACQQVAAMFEYCSLLFD 80
           G +    L   S+ ++  G  P+ +L  +GLD   LA+P + ++  +   +      L  
Sbjct: 9   GDLSVGFLHSLSEALQLHGHDPKPLLEAYGLDAERLAEPHARLSIPRYMRLGHAAIQLAG 68

Query: 81  DPLFGLHLAATQDADIFGSVTAVCRAAPDLRAAIASLIRYLPV-AHSPEAQLELVEDGGM 139
           DP  GL +   +     G        AP +R A  +LIRY  + A +        ED   
Sbjct: 69  DPALGLEMGRLRKPGHLGLAGLTAAQAPTVREAARALIRYEALYASNYRGSSSFHEDAAG 128

Query: 140 AELRWV-VGADLGFNDQANYQAMMLILLLLRTVSGQRF--RAAWVQFSADPSPRELIEIE 196
           A LR+  +     +N       +   +  L  +SGQ     A  + F+A   P      E
Sbjct: 129 AWLRFYSISPYNAYNRFVVDTVLASWVAQLARLSGQAIVPTAIHIDFAA---PDYAQRYE 185

Query: 197 ALLGT----------------TVRPRAPGSAIGFSAALLDLPIATANRLTYRLVGGYLGR 240
           AL G                 T+  R P    G    LL+L  A   R T         R
Sbjct: 186 ALFGRPVCFEAQANQLQLDQRTLAQRNPDHCPGTWRHLLELCEAELERRT---------R 236

Query: 241 LRLFNHADMAERARSYVRGALPAGTCAIERCADRMGLSVRTLQSRLAAHDLHFSDLVEEQ 300
            R      + ER    +   L      +++ A R+ +   TL+ +LA  D  +  ++ + 
Sbjct: 237 TR-----SLRERVAQILGPMLKGQEPDLQQIAARLQMPAWTLRRKLAEEDSSYRVILNDT 291

Query: 301 REQLARIYLRQTPMPIDEVAERLGYAEQTSFGRAFKRWTGQTPRQFRQ 348
           R  LA  Y+R T     E+A  LG++   +F RAFKRW+GQTP  +R+
Sbjct: 292 RRDLAMAYIRDTESAFGEIAWLLGFSSAEAFQRAFKRWSGQTPGDYRR 339