Pairwise Alignments

Query, 175 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 96.7 bits (239), Expect = 2e-25
 Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 10/152 (6%)

Query: 12  ADLRAMRRYARALSRDHVVADDVVQDAVMRAIERRDQFQPDRSRRRWLLAIVHNVFISAK 71
           A L  +RR+A +L     VADD+VQ A  RA+   ++F+P      W+  I+ N++I   
Sbjct: 14  AFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWIDQV 73

Query: 72  RREAAE------TRRNLAFAQIQVDHADPDQEVRADLMQVARAFADLPDHQRAVMHLTVV 125
           RR+         T R+     I     + + E R  L  VA A  +LPD QR V+ L  V
Sbjct: 74  RRQKTAGVQDDITERH----DIAGSSGERETEARLTLKTVAEAITELPDEQREVVLLVCV 129

Query: 126 EGLSYQESADLLGIAVGTVMSRLARARATLRQ 157
           E LSY+E+AD++GI +GTVMSRL RAR +L +
Sbjct: 130 EELSYREAADVMGIPIGTVMSRLMRARRSLAE 161