Pairwise Alignments

Query, 483 a.a., Na+-driven multidrug efflux pump from Sphingobium sp. HT1-2

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 74/344 (21%), Positives = 147/344 (42%), Gaps = 22/344 (6%)

Query: 49  LGPQALAATAN-ANIIMFLMFSVVFGFGMASTVMIAQAVGARDMDAARRAFGSAVGFCFL 107
           LG   LAA    A  I F    +  G  +A   ++++++GA+D++ A+R   ++     L
Sbjct: 43  LGEHELAAAVGYAGSISFFTTLIGIGLSIALGALVSRSIGAKDVELAKRLLLNSAVVTTL 102

Query: 108 LAMGVAVAGWFGGPALLHLLATPPEAFDMALTYLRVIFVAMPASLLSVMMMMGLRGTGDA 167
           +++ V++      P L+ L+       ++A +YL ++  ++P   L++ +   LR  GDA
Sbjct: 103 ISVFVSIVVTTFIPELVTLVGASGHTAELAESYLYILVPSLPFICLAMALGGALRSVGDA 162

Query: 168 RTPLIFMILSVAIDLVLNPVLILGLGPIPAMGIGGSAAATAAAGFVSLIALVIYTYAKDL 227
           +  ++  +    ++ VL+P+ I     + AMGI G+A A+  A     +        K  
Sbjct: 163 KLSMMSTLAGGGVNAVLDPIFIF----LFAMGIEGAALASVLARITVFVIAGRGVMVKHQ 218

Query: 228 PLRL--RGAELGYLRP--AMDEMRVLSTKGLPMGLQMIVMSTSGLVMIGLVNREGFLVTA 283
            L    R      L+P  A+    +L+    P+G   +  + +           G    A
Sbjct: 219 LLGKFNRSDFKADLKPIFAIAGPAILTNIATPIGNAFVTRAIADF---------GDAYVA 269

Query: 284 AYGAAQQIWTYLQMPAMAMGAAVSAMAAQNIGAGRWDRISRITGYGISYLLAITGAMVVV 343
            +    ++         A+  A+  +  QN GAGR+DR+       I +       M ++
Sbjct: 270 GWAVLGRLVPVTFGMIFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLL 329

Query: 344 ILIFHEALLALFLSHNQAVIDAAWNMQLLASWSFMLFGCTMILF 387
           + +    +++LF        D+A  ++   S+  + F  + ILF
Sbjct: 330 LFLLKSQIVSLFDMKG----DSAALIEFFCSYIAVFFIFSGILF 369