Pairwise Alignments

Query, 480 a.a., Type I secretion outer membrane protein, TolC family from Sphingobium sp. HT1-2

Subject, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (253), Expect = 3e-26
 Identities = 100/419 (23%), Positives = 184/419 (43%), Gaps = 19/419 (4%)

Query: 22  SMAGVAHAETLQGALAKAYRTNPTLTGARAGQRATDENVPIQKAAGRPTANSQLQFQELV 81
           +++    AE L     +A   +P L    A + A  E V   ++A  P  N    +    
Sbjct: 15  TLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNI-- 72

Query: 82  IRPSNSFLAPHRSASASGSIDVP--IYSGGTVRNSVKAAETRVESGQANLRGTEASVFSQ 139
              + S  AP  S   S  I+    +Y   +   S+  AE +     +    T+  +  +
Sbjct: 73  ---NRSDQAPRESDLLSAGINFSQELYQRSSWV-SLDTAEKKARQADSQYAATQQGLILR 128

Query: 140 TVAAYMDVIRDIALVSLNAANVKVLEVNLQATNDRFEVGDVTRTDVAQSESRLELARSDL 199
              AY +V+R    +    A    +   L+ T  RFEVG    TDV  ++++ +   +D 
Sbjct: 129 VAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADE 188

Query: 200 QRAESNLITSRENYIAMVGE-----APVDLESPPALPGLPADPDSAVRVALADNPDILAA 254
             AE++L  S E    + G+     A +D +   A     +  ++ +  A   N  +LAA
Sbjct: 189 VLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESS-EALIEKAQQQNLSLLAA 247

Query: 255 QKSREAARYDVKAAKGATLPTLS---GFSQGSYTDYMDKDIAANK--QAAVGATLTIPFY 309
           + S++ AR ++  A    LP+L+   G++ G+ ++   K+ +  +     +G  L +P Y
Sbjct: 248 RISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLY 307

Query: 310 QGGRPAAQVRQNQALESQAIERQIEVERGVISQARAAYAALQASLRTIQSSQKAVDAAEL 369
            GG   +  +Q +     A +      R V+   RA    + AS+  +++ ++AV +A+ 
Sbjct: 308 TGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKS 367

Query: 370 SLEGVRAENSVGSRTILDILNAEQESLNAKVELVTARRNAYVAGFTLLAAMGHAEADDL 428
           +LE   A   VG+RTI+D+L+A +   +A   L  AR +  ++   L  A+G     D+
Sbjct: 368 ALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQDV 426