Pairwise Alignments

Query, 679 a.a., Chaperone protein ClpB (ATP-dependent unfoldase) from Sphingobium sp. HT1-2

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  479 bits (1232), Expect = e-139
 Identities = 283/655 (43%), Positives = 397/655 (60%), Gaps = 33/655 (5%)

Query: 1   VQILARRTKNNPALMGEPGVGKTAIAEGLALRIANGDVPESLRDRRLMALDMGSLIAGAK 60
           V IL RR KNNP ++GE GVGK+A+ EGLALR+  G VP  L++  L +LD+G L AGA 
Sbjct: 209 VDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKVPTQLQNVELYSLDLGRLQAGAS 268

Query: 61  YRGEFEERLKSVLDEVKGAEGDIILFIDEMHTLIGAGKGEGAMDASNLLKPALARGELHC 120
            +GEFE+RLK V+D +K +   IILFIDE HTLIG+G  EG  DA+NLLKPALARGEL  
Sbjct: 269 VKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELST 328

Query: 121 IGATTLDEYQKYVEKDPALQRRFQPVFVGEPTVEDTISILRGIKENYELHHGVRIADNAI 180
           + ATT  EY+KY EKDPAL RRFQ V + EPT++  + ILRG+   YE  H V I D+A+
Sbjct: 329 VAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDAL 388

Query: 181 VAAATLSNRYIADRFLPDKAIDLMDEAASRIRMEVESKPEEIEGLDRRIIQLKIE----- 235
            AAA LS RYI+ R LPDKAID++D A +RI + + + P+ +  L+    Q ++E     
Sbjct: 389 KAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLE 448

Query: 236 -EQALAKETDQASRDRLEALREDLANLEQQSAELTTRWQNERDKIASEGKIKEQLDAARV 294
             Q L +E D    +RL+ LR      E + A LT  WQ ++  + S   ++ +L    +
Sbjct: 449 RAQFLGQEVDS---ERLDVLRNQELADEAEKAALTQSWQQQKSLVESIIALRAEL----M 501

Query: 295 ELEQAQRAGD-----YAKAGELTYSRIPALEKSLEDAQGQSNNALLREEVTSEDIAAVVS 349
           EL QAQ            A +  Y  + A++ +           L+  +V ++ IA V++
Sbjct: 502 ELSQAQEQDPDHLLVVRTALQEQYQALDAIDHA---------ERLMHPQVDADQIAEVIA 552

Query: 350 RWTGIPVDRMMEGERDKLLKMEEVIGKRVIGQKDAVLAVSKAVRRARAGLQDPNRPLGSF 409
            WTG+PVD+M   E  K+  +  ++G+ + GQ+ A+  + + +  ARA L+ P RP G+F
Sbjct: 553 DWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARADLRRPGRPKGAF 612

Query: 410 LFLGPTGVGKTELTKALAGFLFDDDAAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEGGV 469
           L +GP+GVGKTE    LA  L+     +  I+MSE+ EKH+VSRLIG+PPGYVGY EGGV
Sbjct: 613 LLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGV 672

Query: 470 LTEAVRRRPYQVVLFDEVEKAHGDVFNVLLQVLDDGRLTDGQGRVVDFTNTLIILTSNLG 529
           LTEA+R+ PY VVL DEVEKAH +V N+  Q  D G + DG+GRV+D  N +  LTSNLG
Sbjct: 673 LTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDCQNIVFFLTSNLG 732

Query: 530 SQFLANLGDGEDVEKVEPQVMDVVRGHFRPEFLNRLDEIILFHRLGQEHMGPIVEIQVAR 589
            Q + +  D  +  K++  +   +   F+P  L R+ E+I +  LG+E +  IV  ++AR
Sbjct: 733 YQTIVDYAD--EPAKLDEALYPELAAFFKPALLARM-EVIPYLPLGKEVLAQIVRGKLAR 789

Query: 590 VGKLLKDRKITLDLTEAA--ERWLGRIAYDPVYGARPLKRAVQRYLQDPLAEKLL 642
           + KL K R     + E +  +  L R A     GAR L+  ++  L  P++  LL
Sbjct: 790 LEKLFKTRYNAEVVIEESLIDEILSR-ATRSENGARMLEAIIEGQLLPPVSLALL 843