Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor cnrH from Sphingobium sp. HT1-2

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  101 bits (252), Expect = 7e-27
 Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 6/172 (3%)

Query: 12  ELAALTLAGRQSAFAEIMRRHQTAIFRLVRGLVGNAEEALDLTQDCFVSAFSHLRKYDGA 71
           EL    + G + AF  ++R HQ  +F  +R L+G+ +EA DLTQ+ F+ A+  L ++   
Sbjct: 7   ELIQQAVRGDRQAFGALVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAYQALPRWRPE 66

Query: 72  RPLRAWLSRIAINKCRDWRRRQRVRQLFTFGSAPSDDEIEQVPDDAPSAHASAESKIEVE 131
             L+ WL +IA N   D   RQR R +       +D++ E + D APS     +S  ++E
Sbjct: 67  ARLQTWLLQIARNAALD-LLRQRQRHVV----LAADEQAEPI-DPAPSPLRRLQSARDLE 120

Query: 132 RLSAAISALPATLREVLMLRTVEGLSQSEAAKALSVSSKAVETRLYRARARL 183
            L   ++ LP   RE+L+LR VEGLS  E A  L +++  V++RL RAR  L
Sbjct: 121 MLERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREAL 172