Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor cnrH from Sphingobium sp. HT1-2

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 20  GRQSAFAEIMRRHQTAIFRLVRGLVGNAEEALDLTQDCFVSAFSHLRKYDGARPLRAWLS 79
           G + AF  ++ R+Q  +  L+   V N+ +  D+ Q+ F+ A+  +  + G      WL 
Sbjct: 17  GDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLY 76

Query: 80  RIAINKCRDWRRRQRVRQLFTFGSAPSDDEIEQVP----DDAPSAHASAE----SKIEVE 131
           RIA+N  ++    Q  R         SD + E+       DA    ++ E    SK   +
Sbjct: 77  RIAVNTAKNHIVAQSRR------PPASDVDAEEAEFYEGGDALKELSNPENITLSKELKK 130

Query: 132 RLSAAISALPATLREVLMLRTVEGLSQSEAAKALSVSSKAVETRLYRAR 180
            +  AI ALP  L+  + LR ++GLS  E A+ +      V +R++RAR
Sbjct: 131 TVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179