Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor cnrH from Sphingobium sp. HT1-2

Subject, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 82.8 bits (203), Expect = 4e-21
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 13  LAALTLAGRQSAFAEIMRRHQTAIFRLVRGLVGNAEEALDLTQDCFVSAFSHLRKYDGAR 72
           L A  LA   + F  IM+ H   ++R+ R ++ N  +A D+ Q+ +V AF+    + G  
Sbjct: 10  LNAPPLAQDLARFRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFTRFEDFRGDA 69

Query: 73  PLRAWLSRIAINKCRD-WRRRQRVRQLFTFGSAPSDDEIEQVP-----DDAPSAHASAES 126
            +  WL+RI IN+     R+ +R  +L  +     + EI   P      D     A  + 
Sbjct: 70  AITTWLARIVINEALGRLRKGRRQMRLAKYMRQSQEAEIIAFPLNSGISDPEKTMAQRQI 129

Query: 127 KIEVERLSAAISALPATLREVLMLRTVEGLSQSEAAKALSVSSKAVETRLYRARARLAEI 186
              VERL+     LP T R V +LR +EGL   EAA  L +  +   TRL+RAR  L E 
Sbjct: 130 LDLVERLT---DDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRARRILKEQ 186

Query: 187 LAEE 190
           L  +
Sbjct: 187 LERQ 190