Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  547 bits (1410), Expect = e-159
 Identities = 333/1006 (33%), Positives = 538/1006 (53%), Gaps = 21/1006 (2%)

Query: 20   MVGFLLVLAAVAGLFSYMALGRKEDPEFTVKTMMITVGWPGATAQQMSQQVIKPIETVLT 79
            MV  + ++   A  F+   LGR EDP FT+K  M+   +PGAT QQ+ ++V  P+E  + 
Sbjct: 35   MVSLIFLIGGTAAFFN---LGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYPLEKAI- 90

Query: 80   ENIAEIDYVKSKARPGQATLNVTLISTVKSSAVPDIWYRIRKTVTDNRADLPNGVVGPAF 139
            + +  +D V S +  G + + VT+ +      +P IW  +R+ V D +  LP GV  P  
Sbjct: 91   QQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVNPPLV 150

Query: 140  NDEFGTTYGNIYAVTGDGFSYPVLKRYAETLRDRIQALPDVAKTQIIGAQDEAIYVTYDS 199
             D+FG  YG + AVTG+G+SY  L  Y + LR  ++ +  V+K  + G Q E +++    
Sbjct: 151  IDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQVFIEISM 210

Query: 200  ARLAMSGISAQAIADALDTTNAVAASGIVEAGAERVRMQVTGDFASVEAIAATPIVANGK 259
             R++  GIS Q + + L T N V+ +G +  G+E +R+  TG+F  VE +    +   G 
Sbjct: 211  KRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGDLILSERGA 270

Query: 260  S--VRLDAIAKVERKPVHPATFRMRFGAKDAVGVGISLRSDGDVARLGEDLKHTIAALQS 317
               + L  +A+V+R  V   +  + F  K A+ VG+S     +V  +G+     +A L+ 
Sbjct: 271  QGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRLAELKY 330

Query: 318  EMPVGVDIHTVSDQTRVVDESVGEFTTSLIEAIVIVLAVNFLSLGWRPGIVVALCIPLVL 377
            + P+G+DI  V  Q + VD+SV  F  SL +A+ IV+ V    +G R G+++ L + L +
Sbjct: 331  QQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLILLLTV 390

Query: 378  AMTFVCMLYVGIDLQRISLGALIIALGLLVDDAIIVVEAVATHLEAGWTRTRAAVSAYSV 437
              TF+ M Y  IDLQRISLGAL+IALG+LVD+AI+VVE +    + G TR +AA    + 
Sbjct: 391  LGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQAATDIVTQ 450

Query: 438  TAVPMLVGTLITVAGFLPIAMSKATASEYVISLFQVIAISLILSWVVAVIFTPFIA-YHL 496
            T  P+L  T+I V  F PI +S+    EY  +LF V+ ISL+LSW  A+  TPF A    
Sbjct: 451  TKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISLTPFFADLFF 510

Query: 497  LPQRADARDDAGEPEEQYEGRFYGWFRRMLDRCLDRRKTVVAVALAMFVGSMLLFQIGVP 556
              Q+A A   +GE  + Y+G  +  +RR L+ C+ R    + V +     S+  F   V 
Sbjct: 511  RGQKAPA---SGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGF-TKVK 566

Query: 557  RQFFPASDRPELVVDLQLSQNASFAQTQAVAARMEQLLARDDRVVSTTAYLGGGSPRFYL 616
            + FFP+S  P  +VD+ + +      T A+   +E+ L+  + V S T   G G  RF L
Sbjct: 567  QAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGLQRFML 626

Query: 617  PLNVQTPDITLAELVLQTRDEEAREGVIASIQSLFATHFPEARGRVSRLENGPSVGQPVQ 676
              + +       E+  +  D +    ++A  ++     +P+   ++ ++E GP  G  ++
Sbjct: 627  TYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGGGAKIE 686

Query: 677  YRVAGPDLTQIMPVAKRLEELIRADSHARDVNSDLGEPLKAIRVDLDQDKVRALGLSTQA 736
             R+ G D T +  +A ++ +++ AD  A ++  D  E  K +    ++ + R  G++   
Sbjct: 687  ARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGITKAD 746

Query: 737  VQQSLQAAIGGAGTTSFRDRDLALEVVLRLSAAERTDLGRIANLPISTP--NGAVPLAQ- 793
            V + L  +  G     +RD    + +V RL   ER D+  I  + I +P  +  +PL Q 
Sbjct: 747  VDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYIPLQQV 806

Query: 794  -LGHVSAGSEPAVIYQRNRQPTITISADVE---GEQASDLTKRIEPQIEALRRDLPSGAS 849
             LG+     +P ++ ++NR+  +T+ AD +    E A+ L +R++PQIEA+   LP G  
Sbjct: 807  TLGYEMRWEDPLIV-RKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAI--PLPPGYF 863

Query: 850  IVKGGSEEQSSINQKATMAAVPFAIFVIVILLMLQLQNVKRMLVVLATGPLALIGVALIM 909
            +  GG  E S   + +    +P     + ++ +    +VK  L+V  T PLA+IGV   +
Sbjct: 864  LEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGL 923

Query: 910  ALFRIPFGFVAMLGSLALFGMVLRNSVILIAQIDTLSGHGLAMREAVREAAVHRLRPILL 969
                 PFGF+A+LG L+L GM+L+N ++L+ QI+     G     AV +A++ R+RP+ +
Sbjct: 924  LALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCM 983

Query: 970  TALAAILAMIPLTRSTFWGPMAWAIMGGLMVATILTLIVLPALYEL 1015
             A+  IL MIPL    F+ PMA  IM GL  AT+LTLIV+P LY L
Sbjct: 984  AAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRL 1029