Pairwise Alignments

Query, 357 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 90/348 (25%), Positives = 164/348 (47%), Gaps = 26/348 (7%)

Query: 13  LLLPACRDEPQVRDERRAVA---VQRIGADAGTSTSYAGEIRSAFESQIGFEVAGRIVER 69
           LLL  C + PQ+      V     + + +   +  ++ G +R+A  + + F ++GR+ + 
Sbjct: 24  LLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDI 83

Query: 70  RVDLGSSVHAGQTLLRLDNSDYARALDSAAAQSSSARTAAAVQQADLARSRELL-KQGFI 128
            V  G  V  GQ L  LD+ D   AL++A  +  +        + +  R++ +  K   I
Sbjct: 84  AVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNT-------EQEYRRAKAIFEKTQAI 136

Query: 129 SPAEFDQQKAAAIQAQAQLRAAGAQSGTASAQLSRTVLTAPRAGVVTQIQGEVGQVVGAG 188
           S AE D+       A+ ++         A  +L  T +TAP  GV+++   E    V A 
Sbjct: 137 SKAELDKVTNRYDLAKNRVE-------EAKRKLEYTQITAPFDGVISEKTIENFAQVQAN 189

Query: 189 QTIVTLADPSRPEIAVALPEG-SLDRIRSASRLSVSVWSSPGRRYAARLRSISGAADPAT 247
           Q I+ L D +  E+A+ +P    L  +R+ +R    + + P +++  +LR+ S      +
Sbjct: 190 QVIMILQDLNDLEVAIEIPHRVMLSGVRN-TRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248

Query: 248 RTFAARLSV-DAPAQALLMGETAE---LRVEGAAGDAAVRVPLTAVLQSN-GRAQAWVLD 302
           +T++  L   D     ++ G +A+   +  + A  +  + +PLTA++  N G+   WV++
Sbjct: 249 QTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN 308

Query: 303 RRTMVVQPRAVQIGAAQGDMLTIRSGLKPGETIVTAGVHLLRAGEKVR 350
            +    + R V IG    D + I   LKPGE ++ AGV  +R G  VR
Sbjct: 309 AQNQ-AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355