Pairwise Alignments

Query, 880 a.a., DNA mismatch repair protein MutS from Sphingobium sp. HT1-2

Subject, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

 Score =  554 bits (1427), Expect = e-161
 Identities = 349/881 (39%), Positives = 497/881 (56%), Gaps = 34/881 (3%)

Query: 2   ANSTSTTTQPTPMMAQYFTLKAEAQDCLLFYRMGDFFELFFDDAKMAAATLDIALTSRGE 61
           A+ + + +  TPMM QY  LKAE  D LLFYRMGDF+ELF+DDAK A+  LDI+LT RG 
Sbjct: 6   ASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGA 65

Query: 62  HAGQPIPMCGVPVHSAESYLARLIKGGHRVAIAEQTETPAEAKARGGKALVARAIVRYVT 121
            AG+PIPM GVP H+ E YLA+L++ G  VAI EQ   PA +K       V R +VR VT
Sbjct: 66  SAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGP-----VERKVVRIVT 120

Query: 122 AGTLTEETLLDSRRDNMLVALAQTGGEGELGLAAADISTGRFETMTVRAGD-LPAELARL 180
            GT+T+E LL  R DN++ A+    G    G A  DI++GRF+    +  + + AEL R 
Sbjct: 121 PGTVTDEALLSERVDNLIAAIYHHNGR--FGYATMDITSGRFQLSEPQTEEEMAAELQRT 178

Query: 181 RPSEVVIAEG-STLEVANSHPFDKAA----FSSARAEEALKRLFAVATLDGFG-QFSRAE 234
            P E++  E  S + +  S   ++      F    A++ L + F    L GFG + ++  
Sbjct: 179 SPRELLFPEDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLG 238

Query: 235 LAAMGGLISYLDHAGKGTMPFLAPPLRKTSGAHVAIDAATRESLEIVATTGGTRAGSLLG 294
           L A G LI Y+    +  +P +           V +DAATR +LE+     G    +L  
Sbjct: 239 LCAAGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAE 298

Query: 295 AVDRTVTGAGARLLAQDLSAPLMDAPLIDARLGLVQLFHDDATLRSQLRAALRALPDIGR 354
            +D   T  G+R+L + +  P+ D   ++ RL  +    + A L  +L   L+ + DI R
Sbjct: 299 VLDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETA-LYGELHPVLKQIGDIER 357

Query: 355 ALGRVAVGRGSPRDLGQLRDGLGEARLLRERLGRLADQPLLLTQLLPALDGHGALVDALA 414
            L R+A+    PRDL +LR  + +   L   +  L  QP L T+L    +    L D L 
Sbjct: 358 ILARLALRSARPRDLARLRHAMQQLPELHSVMSELK-QPHL-TELRTHAEPMDELCDLLE 415

Query: 415 RALVPSPPTETNNGGYIADGFDPALDELRRLAGDGRRAIAALEAQYREQTGISALKIRHN 474
           RA+  +PP    +GG IADG+   LDE R LA      +  LEA+ R++ GI  LK+ +N
Sbjct: 416 RAIKENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYN 475

Query: 475 GVLGYHVEVPARAADQLMQPESGFTHRQTLAGIVRFNSIDLHEQAGRVAQAGAHALVAEA 534
            V G++++V +R    L+ P   +  RQTL    R+   +L +   +V  + + AL  E 
Sbjct: 476 NVHGFYIQV-SRGQSHLVPPH--YVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEK 532

Query: 535 AHLETLIDAVLDRKADIARAADALARLDVAAALAERAAEGGWQRPLFVVEDGVGPCLDIV 594
              E L D ++     + + A ++A+LDV   LAERA    + RP  V E G+     I 
Sbjct: 533 QLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGI----HIQ 588

Query: 595 GGRHPVVEDALRAQGQPFVANDCRLVATDRLWLVTGPNMGGKSTFLRQNALIVILAQAGA 654
           GGRHPVVE   R   +PF+AN   L    R+ ++TGPNMGGKST++RQ ALI ++A  G+
Sbjct: 589 GGRHPVVE---RVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGS 645

Query: 655 FVPAETATLTLVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQATEHSFVILDEVGRG 714
           +VPAE+A++  +DR+F+R+GASD+LA GRSTFMVEM ETA IL  AT +S V++DE+GRG
Sbjct: 646 YVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRG 705

Query: 715 TSTYDGLALAWAVVEAVHEVNRCRCLFATHHHELTRLSETLDALSLHHVRAREWKGDLVL 774
           TSTYDGL+LAWA  E + +      LFATH+ ELT L   L  L+  H+ A E    +  
Sbjct: 706 TSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAF 765

Query: 775 LHELAEGPADRSYGLAVARLAGLPPLVLKRAKDVLGRLEAGKAKTGGIAAGLDDLPLFAS 834
           +H + EG A +SYGLAVA LAG+P  V+K A+  L +LE   ++           P    
Sbjct: 766 MHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRK-----PSRVD 820

Query: 835 VATQAEEVADP--LRDALDGIDADALSPREALDHIYRLKQL 873
           +A Q   + +P  +  AL G+D D L+PR+ALD +Y+LK+L
Sbjct: 821 IANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLKKL 861