Pairwise Alignments

Query, 265 a.a., Exodeoxyribonuclease III (EC 3.1.11.2) from Sphingobium sp. HT1-2

Subject, 268 a.a., exodeoxyribonuclease III from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (257), Expect = 4e-27
 Identities = 83/275 (30%), Positives = 135/275 (49%), Gaps = 24/275 (8%)

Query: 5   LSIASWNINSVRARIDIVERFLTEEAPDILCLQETKVVNEIFPTDMFKRLGYVHQVLNGQ 64
           + + S+NIN +RAR+  ++  + +  PD++ LQE KV +E FP    + +GY     +GQ
Sbjct: 1   MKVISFNINGLRARLHQLQALIDKHQPDVIGLQEIKVHDEAFPRQEVEAMGY-QVYFHGQ 59

Query: 65  RMHHGVAIMSK-VPIHEDDRFDWQANGEARHVGIRL---DNGVR--IENVYVPAGGDVAD 118
           + H+GVAI+ K  P+     F        + + +      NG +  I N Y P G +V  
Sbjct: 60  KAHYGVAILCKQTPVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILNGYFPQGDNVEH 119

Query: 119 RTVNPKFGQKLDFIERMIEW--SGALDNKPTILTGDFNIAPLECDVW----SHKQLLDV- 171
            T   KF  K  F   ++ +      +++  ++ GD NI+PL+ D+     + K+ L   
Sbjct: 120 ET---KFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTG 176

Query: 172 -VSHTPVECELLGRLQASNDW--VDIGRHFHPAPARLYTWWSYRAKDWAASDRGRRLDHM 228
             S  P E E    LQ   DW  VD  R  HP  +  ++W+ YR++ +   +RG R+D +
Sbjct: 177 KCSFQPEEREW---LQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGF-EDNRGLRIDVI 232

Query: 229 WMTRDVADKAVAHRVVEPARSWEKPSDHIPIITEF 263
             T  +A+      +    R+ +KPSDH PI T F
Sbjct: 233 LATPTLAETCQEAGIDYELRAIDKPSDHAPIWTTF 267