Pairwise Alignments

Query, 418 a.a., Transcription termination factor Rho from Sphingobium sp. HT1-2

Subject, 446 a.a., flagellum-specific ATP synthase (RefSeq) from Shewanella loihica PV-4

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 67/257 (26%), Positives = 116/257 (45%), Gaps = 23/257 (8%)

Query: 134 DNLTPLYPEQKL--RLDTLDPTIK-------DKSARVIDIVSPQGKGQRTLIVAPPRVGK 184
           D L  L+ +QK       L+P  +       D   R I+ +   GKGQR  + A   VGK
Sbjct: 117 DGLGQLHTDQKATRHATMLNPLARRAISEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGK 176

Query: 185 TVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSV---KGEVVSSTFDEPATRHVQ 241
           +V+L  + +  T +     ++V L+ ER  EV +    +   +G   S     PA     
Sbjct: 177 SVLLGMMTRGTTAD----VIVVGLVGERGREVKEFIEEILGAEGRSRSVVVAAPADTSPL 232

Query: 242 VAEMVIEKAKRLVEHKKD----VVILLDSITRLGRAYNTVVPSSGK-VLTGGVDANALQR 296
           +     E + R+ E+ +D    V++L+DS+TR  +A   +  + G+   T G   +   +
Sbjct: 233 MRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAK 292

Query: 297 PKRFFGAARNIEEG-GSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIF 355
             +    A N   G GS++   T L + G  + + I +  +   +  IVL R +AD   +
Sbjct: 293 LPKLVERAGNGGAGQGSITAFYTVLTE-GDDLQDPIADAARAILDGHIVLSRALADSGHY 351

Query: 356 PALDVGKSGTRKEELLV 372
           PA+DV  S +R   +++
Sbjct: 352 PAIDVEASISRVAPMVI 368