Pairwise Alignments

Query, 428 a.a., tRNA-5-carboxymethylaminomethyl-2- thiouridine(34) synthesis protein MnmE from Sphingobium sp. HT1-2

Subject, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

 Score = 67.4 bits (163), Expect = 9e-16
 Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 211 ERLRD-GIRVVLAGPPNAGKSTLLNRLVGREAAIVSDIAGTTRDRIEVPAAIGGTAFLFT 269
           +RL+D  I++ + G PN GKSTL NR++G E  +V D+ GTTRD I +P       ++  
Sbjct: 199 KRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLI 258

Query: 270 DTAGL--REETGDAIEAIGIDRARAALEAADIIL 301
           DTAG+  R+   + +E   + +   A+E A+++L
Sbjct: 259 DTAGVRRRKRINETVEKFSVVKTLQAIEDANVVL 292



 Score = 61.6 bits (148), Expect = 5e-14
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 26/167 (15%)

Query: 219 VVLAGPPNAGKSTLLNRLVGREAAIVSDIAGTTRDRIEVPAAIGGTAFLFTDTAGLREET 278
           V L G PN GKSTL NRL     A+V+D  G TRDR    A +G   F+  DT G+ + +
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI-DGS 63

Query: 279 GDAIEAIGIDRARAALEAADIILWLGE-------PDEA-------PREDALLI------- 317
            + +E     ++ AA++ AD++L++ +        DEA         + A+L+       
Sbjct: 64  EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123

Query: 318 ---AAQSDVALFGPERLGLRLSARTGEGMDALVAMLLDRAATLLPGE 361
              AA ++    G +++  +++A  G G+ AL+  +L+  A  +  E
Sbjct: 124 DADAASAEFWQLGMDQM-YQIAAAHGRGVGALIDRVLNPFAEQMESE 169