Pairwise Alignments

Query, 838 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

Subject, 659 a.a., DNA topoisomerase IV, B subunit, proteobacterial from Pseudomonas stutzeri RCH2

 Score =  375 bits (962), Expect = e-108
 Identities = 229/573 (39%), Positives = 326/573 (56%), Gaps = 28/573 (4%)

Query: 7   EQQNSPNSNEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAG 66
           E ++S     Y A++I+VL GLD VRKRPGMY     D S  +H+  EV DN++DEALAG
Sbjct: 24  EHKDSARQMSYTAEAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAG 79

Query: 67  HCDRIVITLNPDNSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYK 126
           H   + + L+ DNS+ V D+GRG+P  IH EEGV   E+I+T+LHAGGKF N +    Y+
Sbjct: 80  HARSVQVILHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKN----YQ 135

Query: 127 VSGGLHGVGVSVVNALSEWLDLNIWRDGKEHWMRFAYGDATAPLKVIGDAPEGKKGTRVT 186
            SGGLHGVG+SVVNALS  +++ + RDG E+ M FA G     L+VIG   +   GT V 
Sbjct: 136 FSGGLHGVGISVVNALSTRVEVTVKRDGSEYRMSFADGFKATDLEVIGSVGKRNTGTSVR 195

Query: 187 FLASTEKVPGDGGTFKNQTEYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVELYYE 246
           F A  +        + +  ++   +L+H  +  A L  G+ +   D    EK  VE +YE
Sbjct: 196 FWADPK--------YFDSPKFSISRLKHVLKAKAVLCPGLSVSFEDKGSGEK--VEWHYE 245

Query: 247 GGIAAFVKYLDRNKNALMPDPIAIAGTRDDVTIDVALEWNDSYYENVL-CFTNNIPQRDG 305
            G+ +++     +   L  +P       +   +D AL W     E+V   + N IP   G
Sbjct: 246 DGLRSYLVDSVSDYLRLPDEPFVGTLAGNTEAVDWALLWLPEGGESVQESYVNLIPTAQG 305

Query: 306 GTHLAAFRAALTRTLNSYAEKTGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKD 365
           GTH+   R  L   +  + E   LL +  + L  ED+ E +  ++S+K+ +P+FS QTK+
Sbjct: 306 GTHVNGLRQGLLDAMREFCEFRNLLPRG-LKLAPEDIWERIAFVLSMKMQEPQFSGQTKE 364

Query: 366 KLVSSEVRQPLESLMADKMAEWLEENPGHGKMIVQKVIDAAAAREAAKRARELTRRKGAM 425
           +L S E    +  ++ D  + WL  +P  G  + +  I+ A  R  A +  E   RK   
Sbjct: 365 RLSSREAAAFVSGVVKDAFSLWLNAHPELGMQLAELAINNAGRRLKAGKKVE---RKKIT 421

Query: 426 DIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERARF 485
              +LPGKLADC  +DP ++ELFLVEGDSAGGSAKQ R++  QAI+PL+GKILN      
Sbjct: 422 QGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDG 481

Query: 486 DKMLSSKEVGTLIQAMGT--GIRDDFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQ 543
            ++L+S+EV  +  A+G   G  D   L +LRY KI I+ DAD DG HI TLL   F + 
Sbjct: 482 GEVLASQEVHDIAVAIGVDPGAAD---LGQLRYGKICILADADSDGLHIATLLCALFVQH 538

Query: 544 MPQIIEAGHLFIAQPPLYKASRGRSEVYLKDEA 576
              ++EAGH+++A PPLY+   G+   Y  DEA
Sbjct: 539 FRPLVEAGHVYVAMPPLYRIDLGKDIFYALDEA 571



 Score = 47.4 bits (111), Expect = 3e-09
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 756 LLEAILSAGRKGL-SIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTKL 814
           +LE +++  R+G   + R+KGLGEMN  QL ETT+DP+ R ++++ ++  +   EI   L
Sbjct: 576 ILERLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGTREIMDML 635

Query: 815 M 815
           +
Sbjct: 636 L 636