Pairwise Alignments

Query, 838 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

Subject, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  841 bits (2172), Expect = 0.0
 Identities = 468/843 (55%), Positives = 583/843 (69%), Gaps = 57/843 (6%)

Query: 14  SNEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDRIVI 73
           SN Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEV DN+IDEALAG+C  IV+
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 74  TLNPDNSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHG 133
           T++ DNSVSV D+GRGIPT +H EE VSAAEVIMT LHAGGKF    DDN+YKVSGGLHG
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKF----DDNSYKVSGGLHG 117

Query: 134 VGVSVVNALSEWLDLNIWRDGKEHWMRFAYGDATAPLKVIGDAPEGKKGTRVTFLASTEK 193
           VGVSVVNALSE + L I+R GK H   + +G   APL V+G+    + GT V F  S + 
Sbjct: 118 VGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE--RTGTTVRFWPSAQ- 174

Query: 194 VPGDGGTFKNQTEYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVELYYEGGIAAFV 253
                 TF N  E+ +D L  R REL+FLNSGV + L D R E+KK+    YEGGI AFV
Sbjct: 175 ------TFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKD-HFMYEGGIQAFV 226

Query: 254 KYLDRNKNALMPDPIAIAGTRDD-VTIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAF 312
            +L+RNK  +          R+D ++++VA++WND + EN+ CFTNNIPQRDGGTHLA F
Sbjct: 227 THLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 286

Query: 313 RAALTRTLNSYAEKTGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEV 372
           R ALTRTLN+Y +K G  KK + + +G+D REGLTA+VSVK+PDPKFSSQTKDKLVSSEV
Sbjct: 287 RGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 346

Query: 373 RQPLESLMADKMAEWLEENPGHGKMIVQKVIDAAAAREAAKRARELTRRKGAMDIASLPG 432
           +  +ES M +K+A++L ENP   K +  K+IDAA AREAA++ARE+TRRKGA+D+A LPG
Sbjct: 347 KSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 406

Query: 433 KLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERARFDKMLSSK 492
           KLADCQE+DPA SEL++VEGDSAGGSAKQGRNR NQAILPLKGKILNVE+ARFDKMLSS+
Sbjct: 407 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 466

Query: 493 EVGTLIQAMGTGI-RDDFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQIIEAG 551
           EV TLI A+G GI RD++N DKLRYH I+IMTDADVDG+HIRTLLLTFFYRQMP++IE G
Sbjct: 467 EVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 526

Query: 552 HLFIAQPPLYKASRGRSEVYLKDEAALEQYLVDNGVDTMALETTGG--ARTGDDLRSLID 609
           +++IAQPPLYK  +G+ E Y+KDE A+ QY V   +D   L       A  G+ L  L+ 
Sbjct: 527 YIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQ 586

Query: 610 HARRMRAVMRYVPRRYDPAIIEALGLTGALDPELSEAQLAERLAMAVAWIASHDPEGKWT 669
                  ++  + RRY  A++  L     ++ EL     A++ A+             WT
Sbjct: 587 QYNAAIKLVERMSRRYPYAMLHELIYVPRINAEL----CADKAAVEA-----------WT 631

Query: 670 GRIAEG------GGFHFERLWRGVTDHHVIEHGFLGSAEARKLHGTASEEAESYAKGSRL 723
            R+ E       G   +  L     +H+   + +L   + R  HG   E    Y   + L
Sbjct: 632 QRLVEQLNAKEVGASQYSVL----VEHNAELNVYLPKIQVR-THGVTHE----YLLSADL 682

Query: 724 VSAKAVAAQDELGED-----ELPAVSAKGVN---ISRPSELLEAILSAGRKGLSIQRYKG 775
           +++K  A   +L E      E  A   +G     IS  +  L+ ++   R+GLSIQRYKG
Sbjct: 683 INSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRYKG 742

Query: 776 LGEMNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTKLMGDVVEPRREFIQDNALNVAN 835
           LGEMN +QLWETT+DP+ R M++V +E A  ADE+FT LMGD VEPRR FI+ NAL VAN
Sbjct: 743 LGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVAN 802

Query: 836 LDV 838
           LDV
Sbjct: 803 LDV 805