Pairwise Alignments

Query, 1005 a.a., TonB-dependent receptor from Sphingobium sp. HT1-2

Subject, 857 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

 Score = 86.7 bits (213), Expect = 6e-21
 Identities = 69/210 (32%), Positives = 114/210 (54%), Gaps = 23/210 (10%)

Query: 1   MGVYRNKGACAASL-----IAMGWAMTAGSAFAQDA-APAADAADGIVVVGSQIKGAKIN 54
           M  ++NKG   ++L     +A+  ++ +  A A D  A A+   + I VVG++     I 
Sbjct: 1   MTTHKNKGFGVSALSFAISLALTGSLASTQALADDQQAEASQNIEKIAVVGTRSAPRSIG 60

Query: 55  EA-LPVTVVSTDEIKSAAAVSG-DELFRSIPQFGDVQFNSQYLPGSSNGARGDVGSLDLR 112
           ++ +P+ ++S+D++K   +    D L  ++P F     NS+  P S   A   +  ++LR
Sbjct: 61  DSPVPIDIISSDDLKKNGSTDMIDMLVTTVPSF-----NSRAQPISD--AATLIRPVNLR 113

Query: 113 SLGIGNTLVLLNGRR-----VVAHPTSQANDQLVPVLSYNTNAIPVNGLERLEVLRDGAA 167
            L   +TLVL+NG+R     V+A      ND        + + IP   L+++EVLRDGAA
Sbjct: 114 GLPSDSTLVLVNGKRRHRASVIAFQGGGINDG---AQGPDISVIPSAALKQVEVLRDGAA 170

Query: 168 AIYGADAVAGVVNTVLKTDYQGAELSLQYG 197
           A YG+DA+AGV+N VLK D +G  +++  G
Sbjct: 171 AQYGSDAIAGVMNFVLKDDAEGGSITVGQG 200



 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 160/748 (21%), Positives = 265/748 (35%), Gaps = 153/748 (20%)

Query: 288 GTSLTNASGQFHLQPTSSTGCVAAIG---NDRCIQNGAMATAGADRDLRYDSLAQGTSIM 344
           G S+T   G+++    ++T   A +G   +D    N ++    AD   R        +++
Sbjct: 192 GGSITVGQGEYYEGDGATTTIDANVGLPLSDAGFVNLSLQYKNADATSRSMQRPDAANLI 251

Query: 345 PRLNRL---NLFMTGHYDISDDVTFFAEAGFYRSKTKAQQSPVATLSSIPIYVPASNYWN 401
            + N        + G+ +I DD +FF  +G Y     A+      LSS  + V    Y N
Sbjct: 252 EQGNTFVQDPAQVWGNPEIKDDYSFFLNSG-YDINDNARLYAFGNLSSRDV-VGGFYYRN 309

Query: 402 P--LGQAVFANG--TVNPNRLAGTNAPAAGLPLTIN------NYLFED-----FGPMNVT 446
           P   G     +G  T+    + G  +  A +P+  N      N L  D         N  
Sbjct: 310 PHNRGNVYSLDGGETLLVGAVNGDPSTCAVVPIPKNADGSDGNVLETDAYKAMLADPNCF 369

Query: 447 VTNQ---------------QYRLLAGLRGEFNGFNWESAISYSEAWARDVSDNISRTKLQ 491
             NQ                    AG++GE   +N++    +S     + S    +  L 
Sbjct: 370 AMNQLRPGGYTPQFAGTVEDTSFFAGVKGELGAWNYD----FSAGMGNNKSTFSLKNSLN 425

Query: 492 EYLSLSTPDAYNIFGTSVNSQSTIDAMREELVRYTRSTLATYDFRISKSDLFTLPGGNVG 551
             L L TP  +   G    +++T++     ++     TL + +              ++ 
Sbjct: 426 PSLGLDTPTDFET-GAYEQAETTVNLDFSRML-----TLGSVE--------------DIS 465

Query: 552 FAAGIEARRETQLDDRDPRIDGTITYTDPLTGAVAGDFVNSALNNDTSGHR----EVFGA 607
           FA G E R E+            IT  +  +  +AG + +   N  + G +    E  G 
Sbjct: 466 FATGFEWREESF----------EITQGEEASW-IAGPYADQGFNIGSHGFKGFGPESAGK 514

Query: 608 YAEFAVPLVSPEMDIPLVRSLDLQLAGRYEHYSDFGDVAVPKIAGAWEVVRGIRFRGSWA 667
            +   + + + +M+  L     L  A RYE +S FGD    K+   +     + FR S +
Sbjct: 515 NSRNNIGVYA-DMEAYLGERWLLGAALRYEDFSTFGDTLNYKLTAQFTATDDLSFRASHS 573

Query: 668 KSFRAPNLEQTNATVVTRANSRTDYIMCEADVRAGRITDFSQCSRAQTTSARRS--GNPD 725
             FRAP + Q N       N++T  +            D  Q   A  T    +  G   
Sbjct: 574 TGFRAPTVGQENV-----VNTQTSIVN----------GDLIQTFIAPPTDPLSAFYGGKV 618

Query: 726 LDPERAKTLSFGVVLEPPLPDGMGHLTFTTDWWRVRQTGLVGIFGEGNALILDY-LLRKQ 784
           L PE + + + G V E        +L  T D++ +  TG +    +      DY  LR  
Sbjct: 619 LKPEESVSYALGAVFEHE------NLFVTLDYYNIEVTGRIAQSSQIEVEAKDYDALRAA 672

Query: 785 GSSNPNVIRAAATASDVEAFAGTGLTPAGEVLYVLDQYTNLQPQTVKGLDFNLTYRTPET 844
           G   P +I A                        +  YTN    T +G+D   +Y T   
Sbjct: 673 GVEFPELISA------------------------VTYYTNDFDTTTQGIDLVASYDTQLL 708

Query: 845 SVGSFNFAVNASHFLKYYQEPSPGIAELLAAQDAGDIDAAVNISGGRSLLQLDRKPKWRG 904
           S G   F++          + +P   +                  G+     D  P  R 
Sbjct: 709 S-GDTKFSLAYGWTDTSVDKYNPNTTD-----------------EGKVRRLEDGIPAHR- 749

Query: 905 SASLTW--SLNNVTVGAFAQYTGKVYDTGLID-ADGDYWTVKATTTANLYGQYRFTEGSL 961
            A+LTW  S +  ++     Y G+ Y T   D +D       +  T +L   Y+F    L
Sbjct: 750 -ATLTWAQSWDRFSMSLRGNYFGEYYATHADDTSDWGSEMADSAVTVDLELSYQF----L 804

Query: 962 SGTSMRIGVRNLFDKAPPLSSSGYQGQL 989
              ++ IG  NLFD+       G +G+L
Sbjct: 805 DSLTVSIGANNLFDQEAQKLKDGTRGEL 832