Pairwise Alignments

Query, 316 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Sphingobium sp. HT1-2

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  242 bits (618), Expect = 8e-69
 Identities = 146/306 (47%), Positives = 183/306 (59%), Gaps = 13/306 (4%)

Query: 11  TIGEAQAGLRLDRALAELLPDLSRERIKALIVEGQI-VSGGRSLNPSMKVAVGQDYSITL 69
           T+ ++Q G RLD+A+AEL  D SR R+K  ++EG+I V+G     P  KV  G+  ++  
Sbjct: 10  TVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQA 69

Query: 70  PAPVALDAVAQDIPLDIVHEDADLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCDGQLSG 129
                    AQD+PL+IV+ED D+IV++KP   VVHP AG  D T++NALL H     S 
Sbjct: 70  ELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH----YSP 125

Query: 130 IGGVARPGIVHRIDKDTSGLLVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPAPGSGT 189
           I  V R GIVHR+DKDT+GL+VVAK+  A   L R  +   + R Y AIV G    G G 
Sbjct: 126 IAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GM 184

Query: 190 VDAWIGRSDADRKKMAVHREGRGKHAVTHYRVMERLRGAAMVECRLETGRTHQVRVHMAH 249
           +D  IGR    R  M+V     GKHAVTHYRV E  R    +  RLETGRTHQ+RVHMA+
Sbjct: 185 IDKPIGRHSTKRTLMSV--SPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAY 242

Query: 250 LGHPLIGDPVYGRDRKGFKSILETL-----GFKRQALHAKRLGFIHPVTEEPLAFDSPLP 304
           L HPL+GD  YG   +  K   E L      F RQALHA  L F HPVT E L F +P+P
Sbjct: 243 LQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302

Query: 305 ADMQEL 310
            DM E+
Sbjct: 303 DDMVEM 308