Pairwise Alignments
Query, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2
Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021
Score = 378 bits (971), Expect = e-109
Identities = 209/464 (45%), Positives = 289/464 (62%), Gaps = 42/464 (9%)
Query: 3 FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62
F ELGLSE I+ L+A + +PTPIQ +AIP++L+ DL G+AQTGTGKTAAF LP ++
Sbjct: 4 FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63
Query: 63 FARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRALS 122
+ + + R LVL+PTREL QIA + + + + L + V GGV +NKQ L+
Sbjct: 64 LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123
Query: 123 AGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDRQN 182
GVDI+VATPGRLLDL+ ++A T+ VLDEADQM+D+GFIH L++I+KL+P++RQ
Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183
Query: 183 LFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAE-KQALLHIVLKT 241
L FSATMPK I LAG++L DPVKV V+P A++V Q + FV + K +L L
Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243
Query: 242 EEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVAT 301
+LIF+RTKHGA+++++ L+ G +A +IHGNKSQ QR AL+AFR G ++LVAT
Sbjct: 244 NPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVAT 303
Query: 302 DIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIER 361
D+AARGID+ GV+HV N+++P VP+ YVHRIGRTAR G DGIAI+F A DE L+ IE+
Sbjct: 304 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEK 363
Query: 362 ATKVKPEIVPLPENFLEAVRNLPKPAPQRRGPSQSPAQQAKRAEGQRRYQEGQKAQRGAP 421
++ + ++PA QA+ ++G
Sbjct: 364 LMGIQIAV----------------------ASGEAPADQARPSKG--------------- 386
Query: 422 DKARRGEGGHRGEGAHRGEGDG---AGAKKNFRRRRGGGGGGGG 462
+ RG G RG G RG G G G +++ +R+ GG G
Sbjct: 387 -RGGRGNGQPRGNGQPRGNGAGQRQGGPRRDRPQRQAAAGGFAG 429