Pairwise Alignments

Query, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

Subject, 799 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  322 bits (825), Expect = 3e-92
 Identities = 180/431 (41%), Positives = 262/431 (60%), Gaps = 13/431 (3%)

Query: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60
           M F +LGLS   ++A+    Y  PTPIQ +AIP +  GRD+ GIAQTGTGKTA+F LP +
Sbjct: 1   MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120
           D  A       +   R L+L+PTRELA Q++++F  YG++ +LS+  + GG  +N+Q + 
Sbjct: 61  DILASGKAKARMP--RSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKV 118

Query: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR 180
           L  GVD+++ATPGRL+DL ++ +  ++D ++ V+DEAD+M+DMGFI  ++RI  LLP+ R
Sbjct: 119 LDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIR 178

Query: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK 240
           Q LFFSATM KEI  LA  FL +P +V + P    AE V Q L  V  +EK+  L  +L+
Sbjct: 179 QTLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLR 238

Query: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300
            E +  A IF   K   D + + L G G    A+HG+  Q  RT  L+ F+    +L+V 
Sbjct: 239 RETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVC 298

Query: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360
           +D+AARGIDV+ VSHV NF++P  PE Y+HRIGRT RAG  G A +    ++  YL+AIE
Sbjct: 299 SDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIE 358

Query: 361 RATKVKPEIVPLPENFLE--AVRNLPKPAPQ-----RRGPSQSPAQQAKRAEGQRRYQEG 413
               +   I P P+  L   AV ++     +     +RG    P + A+R+   R   + 
Sbjct: 359 NL--LGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRS--GRGSADA 414

Query: 414 QKAQRGAPDKA 424
           ++ +  AP++A
Sbjct: 415 ERPRPLAPERA 425