Pairwise Alignments

Query, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  290 bits (741), Expect = 1e-82
 Identities = 164/380 (43%), Positives = 232/380 (61%), Gaps = 8/380 (2%)

Query: 3   FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEG-RDLCGIAQTGTGKTAAFALPSLD 61
           F  LGLS+ I++AL  K +  PTPIQ++AIP+L+EG RD+ G AQTGTGKTAAF +P L+
Sbjct: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63

Query: 62  YFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRAL 121
               + + T     + L+L+PTRELA Q+A+         RL+V  V+GG  +++QIR L
Sbjct: 64  TIDEHSRNT-----QALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118

Query: 122 SAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDRQ 181
             GV IVV TPGR+LD I +R   +++    VLDEAD+M++MGFI  ++ I K +  D++
Sbjct: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178

Query: 182 NLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLKT 241
            L FSAT+P  I  LA  ++ +   + V  Q  T     Q    ++  +K  LL  ++ T
Sbjct: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238

Query: 242 EEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVAT 301
           E+    LIF +TK   D V   L   G  A  +HG+ +QAQR   L  F+     +LVAT
Sbjct: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298

Query: 302 DIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIER 361
           D+AARGID++ ++HV+NF+IP  PE YVHRIGRT RAG  G AI+FV   E    K I++
Sbjct: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358

Query: 362 --ATKVKPEIVPLPENFLEA 379
              T++K E VP  ++ + A
Sbjct: 359 IAKTEIKREEVPDVKDIISA 378