Pairwise Alignments

Query, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  312 bits (800), Expect = 1e-89
 Identities = 166/361 (45%), Positives = 234/361 (64%), Gaps = 1/361 (0%)

Query: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60
           M F++LGL   ++KA+T   Y  PTPIQ +AIP +L G+++   AQTGTGKTA+F LP L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120
             FA  PK  P K  R ++L+PTRELA Q+ Q+   Y ++L L+   ++GGV    Q + 
Sbjct: 61  HRFADAPKIRP-KRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119

Query: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR 180
           L  GVD++VATPGRLLD+  QRA    +  + VLDEAD+M+DMGFI  +  I + LP  R
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR 179

Query: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK 240
           QNL FSAT+ K+++ALA   + D +++ ++ ++  + ++ Q LT V++  K ALL  ++K
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIK 239

Query: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300
                +ALIF +TKHGA ++V  LE  GI A A H  +SQA R   L  F+ G    LVA
Sbjct: 240 ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299

Query: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360
           T + +RGID+  +  VIN+++P+  + Y+HRIGRT RAG  G AISFV+ D+   L AIE
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIE 359

Query: 361 R 361
           R
Sbjct: 360 R 360