Pairwise Alignments

Query, 356 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 367 a.a., NolF secretion protein from Sinorhizobium meliloti 1021

 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 11/192 (5%)

Query: 63  RARDVSSLVSGRVAEFYVRDGDHVRAGDPIVRVVDVDPDFLARLAGEKAQVEAQIAAVQQ 122
           R   ++S VS  + E  V+ GD V AGD +VR      +  + + G KA+ +A  A  + 
Sbjct: 68  RRSTLTSRVSSTIIELPVQIGDVVNAGDLLVRFERGALE--SAVTGRKAEADALSAQTEL 125

Query: 123 ARATAMIDVNRTSQLYAEGLAARRDYEQTQIKVADVDAKLAEARAKLKQIEIKLAQSSAQ 182
           A A     + R ++L   G A+          V D+ A+L   +A++   E  L+ +  +
Sbjct: 126 AEAV----LERNTRLGERGAASEATRLAALADVLDLRAQLRSKQAEVSDAERSLSHAEVR 181

Query: 183 IVSAPREGRVQDLNAAAGGALISSGTVLATIAPENITRAVELYVDGRDVPLVEPGRSVRL 242
                  G V    +   G  +   T L TI   N    V+  V    +PL+   +SV L
Sbjct: 182 A----EFGGVIAARSVEEGQTVPLNTQLMTIVELNRLE-VDAGVPTSRIPLIRLKQSVEL 236

Query: 243 EFEGFPAFQFSG 254
             EGFP   FSG
Sbjct: 237 TVEGFPGRTFSG 248