Pairwise Alignments

Query, 560 a.a., HlyB/MsbA family ABC transporter from Sphingobium sp. HT1-2

Subject, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 109/519 (21%), Positives = 228/519 (43%), Gaps = 42/519 (8%)

Query: 30  IVYTVAISLLSLATPISVQLLINSVARTALVAPLWILSGVLLALLLVVAGLSALRVYLLA 89
           ++ ++ I+L ++A P+  +++ + V        LW+LS  +L + L       LR Y + 
Sbjct: 158 LIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFID 217

Query: 90  IFERR----IFARVVAEITVRAVHAQNPFFVDESRGSLFNRYFDMVIVQKSVPSLVIGAF 145
           +  ++    I +++ +++    + A+ P     S G+      +   +++   S  I + 
Sbjct: 218 VAGKKSDILISSKLFSKVMGIRMEARPP-----SVGAFARHLQEFESIREFFTSATISSL 272

Query: 146 TIVLQGAVGLVVTSFYHPFFLAFNLVLVTVCLMIWLAWRHGAITGAV--GVSHAKHNAAH 203
            I L  A+  +V  +     L +  V+  + L+I+       +  A+  G   A    A+
Sbjct: 273 -IDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYAN 331

Query: 204 WLESVGGSNG--FYKSARHLNFAMDRSETVIADYIAAHRRYFRYSFAQTLGYFLVYAFAA 261
            +ES+ G      + +     +  + +   +A++    RR    S   T G+  V   A 
Sbjct: 332 LIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRR-ITDSIQNTAGF--VQQAAN 388

Query: 262 AALLALGGNLILAGQLSIGQLVAAELILSGVFYGIYQLGSYLDTFYDLVASSEEL-SQIL 320
             ++ +G  LI  G L++G L+AA ++       + QL S L T Y+   SS  +  Q++
Sbjct: 389 IGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQL-SLLSTRYNQAKSSMTIIEQVM 447

Query: 321 AIPQERLGQRGEAPRDGSVRFRDVEIDKAQINFE-------------IASGEQAVILAEP 367
           ++P E+  + G+      +    +E+D+   ++              I  GE+  I+   
Sbjct: 448 SMPDEQ--EEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRI 505

Query: 368 GM-ESALALLLKRHAAPDSGIVLIGGSELGSFDMYLLRSAVMVLNRPTIIDV-TLREYLS 425
           G  ++ L  L+     P  G V I  +++       +R  +  + + +++   ++R+ ++
Sbjct: 506 GSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNIT 565

Query: 426 FAEGRDM-DGARIMNALERVGLGARLARLPHGLDTQLASSGSPLSIVEVMQLKLANALLS 484
              GR + D   +M+A  R G+     + P GL+ Q+   G  LS  +   + +A A L 
Sbjct: 566 L--GRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLG 623

Query: 485 RPRVLLLSQLYDMMPIAS---LKATLAELRAAGTTVLLS 520
           RP VLL+ +    M   S   +K  L++L+ + T +L++
Sbjct: 624 RPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILIT 662