Pairwise Alignments

Query, 560 a.a., HlyB/MsbA family ABC transporter from Sphingobium sp. HT1-2

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score = 68.9 bits (167), Expect = 5e-16
 Identities = 111/518 (21%), Positives = 217/518 (41%), Gaps = 60/518 (11%)

Query: 38  LLSLATPISVQLLINSVARTALVAPLWILSGVLLALLLVVAGLSALRV-YLLAIFERRIF 96
           ++SL  P+  +   N+ +    + P  IL       L+ V GLS     Y L+     + 
Sbjct: 44  MISLLKPLLDEGFGNAESNFLRILPFMILG------LMFVRGLSGFASSYCLSWVSGNVV 97

Query: 97  ARVVAEITVRAVHAQNPFFVDESRGSLFNRY-FDMVIVQKSVPSLVIGAFTIVLQGA--V 153
            ++   +    +H    FF  ES G L +R  +D   V  +    ++   +IV +GA  +
Sbjct: 98  MQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALV---SIVREGASII 154

Query: 154 GLVVTSFYHPFFLAFNLVLVTVCLMIWLAW-----RHGAITGAVGVSHAKHNAAHWLE-- 206
           GL+   F++ + L+  L++V   +   +++     R  +      + H   +A   L+  
Sbjct: 155 GLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGH 214

Query: 207 ----SVGGSNGFYKSARHLNFAMDRSETVIADYIAAHRRYFRYSFAQTLGYFLVYAFAAA 262
               S GG     K    ++ +M R +T+            +   AQ++   ++   A+ 
Sbjct: 215 KVVLSYGGQEVERKRFDKVSNSM-RQQTM------------KLVSAQSIADPVIQMIASL 261

Query: 263 ALLALGGNLILAG------QLSIGQLVAAELILSGVFYGIYQLGSYLDTFYDLVASSEEL 316
           AL A+   L LA       +L+ G        + G+   +  L S    F   +A+ + L
Sbjct: 262 ALFAV---LFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318

Query: 317 SQILAIPQERLGQRGEAPR-DGSVRFRDVEIDK--------AQINFEIASGEQAVILAEP 367
             ++ +  ER   + EA R +G V  +DV            + ++F I  G+   ++   
Sbjct: 319 FGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRS 378

Query: 368 GM-ESALALLLKRHAAPDSGIVLIGGSELGSFDMY-LLRSAVMVLNRPTIIDVTLREYLS 425
           G  +S +A L  R    DSG + + G ++  + +  L R   +V     + + T+   ++
Sbjct: 379 GSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIA 438

Query: 426 FAEGRDMDGARIMNALERVGLGARLARLPHGLDTQLASSGSPLSIVEVMQLKLANALLSR 485
           +A   +    +I  A  +      +  +P GLDT +  +G+ LS  +  ++ +A ALL  
Sbjct: 439 YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498

Query: 486 PRVLLLSQLYDMMPIAS---LKATLAELRAAGTTVLLS 520
             VL+L +    +   S   ++A L EL+   T ++++
Sbjct: 499 APVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536