Pairwise Alignments

Query, 560 a.a., HlyB/MsbA family ABC transporter from Sphingobium sp. HT1-2

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score = 96.7 bits (239), Expect = 3e-24
 Identities = 113/530 (21%), Positives = 220/530 (41%), Gaps = 23/530 (4%)

Query: 5   RFGLRQAAAWLSEVVGPDRSYVNVGIVYTVAISLLSLATPISVQLLINSVARTALVAPLW 64
           +FGL    +W +  +   +S +    +Y +A+ + +L +P+  + +I+ V     ++ L 
Sbjct: 150 KFGL----SWFAPSILRQKSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLH 205

Query: 65  ILSGVLLALLLVVAGLSALRVYLLAIFERRIFARVVAEITVRAVHAQNPFFVDESRGSLF 124
           +L+  +LAL +     S LR  +      ++ A +   +    V     +F     G + 
Sbjct: 206 VLALAMLALAIAEPAYSYLRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQII 265

Query: 125 NRYFDMVIVQKSVPSLVIGAFTIVLQGAVGLVVTSFYHPFFLAFNLVLVTVCLMIWLAWR 184
            R  +M  +++ +    +     ++   V L V   Y        +  + +  ++WL   
Sbjct: 266 ARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAG 325

Query: 185 HGAITGAVGVSHAKHNAAHWL-ESVGGSNGFYKSARHLNFAMDRSETVIADYIAAHRRYF 243
                       +  NA  +L E+V G      +A    F +++ + +++  +       
Sbjct: 326 PLIRKKVESEYESDANATTFLTEAVTGIETIKTTATEHRF-LEQWQRILSQQLNRSFDAQ 384

Query: 244 RYSFAQTLGYFLVYAFAAAALLALGGNLILAGQLSIGQLVAAELILSGVFYGIYQLGSYL 303
           +          LV    AA LL  G + +L G+++ GQLVA  ++   V   + +L    
Sbjct: 385 KSGLIAGQAIALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIW 444

Query: 304 DTFYDLVASSEELSQILAIPQE--RLGQRGEAPRDGSVRFRDVEIDK--------AQINF 353
             F   + +   +  IL  P+E  + G       DG + F ++            A ++ 
Sbjct: 445 QDFQHTLIALRRVGDILDEPRENSKQGLASVPELDGGIEFSNIRFRYHQDAPEVLANLSL 504

Query: 354 EIASGEQAVILAEPGM-ESALALLLKRHAAPDSGIVLIGGSELGSFD-MYLLRSAVMVLN 411
           +I  G+   +    G  +S L  LL+R   P  G VL+ G +L   D + L R+  +VL 
Sbjct: 505 KIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQ 564

Query: 412 RPTIIDVTLREYLSFAEGRDMDGARIMNALERVGLGARLARLPHGLDTQLASSGSPLSIV 471
              +   ++ + +   + +  D   I +A +  G  A +  LPHG +  +   G+ LS  
Sbjct: 565 ESILFSGSVADNIRLCKPQASD-EEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGG 623

Query: 472 EVMQLKLANALLSRPRVLLLSQ---LYDMMPIASLKATLAELRAAGTTVL 518
           +  ++ LA ALL  PR+LLL +     D    AS+ + + E+   G TV+
Sbjct: 624 QRQRIALARALLVNPRILLLDEATSALDYNSEASIMSNMDEI-CRGRTVI 672