Pairwise Alignments

Query, 437 a.a., Replication-associated recombination protein RarA from Sphingobium sp. HT1-2

Subject, 449 a.a., replication-associated recombination protein A from Vibrio cholerae E7946 ATCC 55056

 Score =  358 bits (920), Expect = e-103
 Identities = 200/446 (44%), Positives = 273/446 (61%), Gaps = 29/446 (6%)

Query: 5   FSSDDVLPAGIDHAPLADRLRPAVLADVVGQEHLTGPDGAIGRMVAAGRLSSILFWGPPG 64
           FS D+      D  PLA R+RP  +   +GQ+H+ GP   + R + AG + S++ WGPPG
Sbjct: 8   FSGDE------DFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPG 61

Query: 65  TGKTTISRLLADAVGMRFEPISAVFSGVADLKKVFAAAKDHGRRGEKTLLFVDEIHRFNR 124
           TGKTT++ + A+      E +SAV SGV +++     A+++   G +T+LFVDE+HRFN+
Sbjct: 62  TGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNK 121

Query: 125 AQQDSFLPFVEDGTVTLVGATTENPSFELNAALLSRAQVLILRRLDADALEQLLDRAEAL 184
           +QQD+FLP +EDGTVT +GATTENPSFELN ALLSRA+V  L  L+   + Q L +A A 
Sbjct: 122 SQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIAD 181

Query: 185 IGRPLPLDIA-----AREALLASADGDGRFLLNQVETLY-----------SIDIPAPLDP 228
             R L    A       + L    +GD R  LN +E LY            ID+P   + 
Sbjct: 182 TERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEV 241

Query: 229 AGLSALLHRRVAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRR 288
           AG       +V+ +D   +  Y+LISA+HKS+RGSDP AALY+ ARM++AG +PLY+ RR
Sbjct: 242 AG------EKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARR 295

Query: 289 LVRFATEDIGLADPQAVIQCLAAKDAYEFLGSPEGELAIVQACIYCATAPKSNAGYMAMK 348
           L+  A+ED+G ADP+ +   LAA D +  +G  EGE AI QA +Y A APKSNA Y A K
Sbjct: 296 LLAIASEDVGNADPRGMQVALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWK 355

Query: 349 TAFRTARETGSLMPPMNIVNAPTKLMKQVGYGKNYQYDHDAEGGF-SGANYWPEEMSPQT 407
            A   A        P ++ NAPT+LMK +GYG+ Y+Y HD  G + +G  Y+P EMS   
Sbjct: 356 QALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTR 415

Query: 408 FYTPTERGFEARIAERIAYWNKLRAE 433
           +Y PT RG E +IAE++AY   L A+
Sbjct: 416 YYQPTPRGLETKIAEKLAYLADLNAK 441